Hb_020581_010

Information

Type -
Description -
Location Contig20581: 16876-32854
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21211: 16884-31652 , PASA_asmbl_21212: 19247-19390 , PASA_asmbl_21213: 20514-20972 , PASA_asmbl_21215: 26027-26141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020581_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000342_100 0.0856321845 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
3 Hb_000003_080 0.0872556033 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
4 Hb_000272_020 0.0902110437 - - oxidoreductase, putative [Ricinus communis]
5 Hb_002253_100 0.0910549163 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
6 Hb_002893_050 0.0914734088 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
7 Hb_001842_100 0.0955390631 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
8 Hb_038172_010 0.097940997 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
9 Hb_000103_080 0.0990492472 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
10 Hb_008406_190 0.1035488893 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
11 Hb_001140_370 0.1038476867 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
12 Hb_001579_270 0.1044910514 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
13 Hb_000610_050 0.1047403779 - - skp1, putative [Ricinus communis]
14 Hb_033594_120 0.105193447 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
15 Hb_000960_060 0.1054766517 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
16 Hb_000680_160 0.1062555728 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
17 Hb_000116_440 0.1063980127 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
18 Hb_003428_030 0.1066348354 - - tRNA, putative [Ricinus communis]
19 Hb_002739_050 0.1081764848 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
20 Hb_010423_040 0.1089636641 - - hypothetical protein JCGZ_17463 [Jatropha curcas]

Gene co-expression network

sample Hb_020581_010 Hb_020581_010 Hb_000342_100 Hb_000342_100 Hb_020581_010--Hb_000342_100 Hb_000003_080 Hb_000003_080 Hb_020581_010--Hb_000003_080 Hb_000272_020 Hb_000272_020 Hb_020581_010--Hb_000272_020 Hb_002253_100 Hb_002253_100 Hb_020581_010--Hb_002253_100 Hb_002893_050 Hb_002893_050 Hb_020581_010--Hb_002893_050 Hb_001842_100 Hb_001842_100 Hb_020581_010--Hb_001842_100 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_000342_100--Hb_002893_050 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_000003_080--Hb_001842_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000103_080 Hb_000103_080 Hb_000272_020--Hb_000103_080 Hb_002739_050 Hb_002739_050 Hb_002253_100--Hb_002739_050 Hb_014109_040 Hb_014109_040 Hb_002253_100--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_002253_100--Hb_007576_080 Hb_005697_060 Hb_005697_060 Hb_002253_100--Hb_005697_060 Hb_003780_030 Hb_003780_030 Hb_002253_100--Hb_003780_030 Hb_002893_050--Hb_000610_050 Hb_002893_050--Hb_024071_020 Hb_007875_030 Hb_007875_030 Hb_002893_050--Hb_007875_030 Hb_002893_050--Hb_001140_370 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_005291_030 Hb_005291_030 Hb_001842_100--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_001842_100--Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001842_100--Hb_002271_020 Hb_001221_100 Hb_001221_100 Hb_001842_100--Hb_001221_100 Hb_001842_100--Hb_002893_050 Hb_000086_380 Hb_000086_380 Hb_001842_100--Hb_000086_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0198 14.7987 9.76531 25.0991 23.5473 24.8743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9369 46.9887 9.77869 19.8384 18.668

CAGE analysis