Hb_002739_050

Information

Type -
Description -
Location Contig2739: 39430-49161
Sequence    

Annotation

kegg
ID rcu:RCOM_0113190
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_012074738.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9D0L4
description Uncharacterized aarF domain-containing protein kinase 1 OS=Mus musculus GN=Adck1 PE=2 SV=1
trembl
ID B9SR97
description Ubiquinone biosynthesis protein coq-8, putative OS=Ricinus communis GN=RCOM_0113190 PE=4 SV=1
Gene Ontology
ID GO:0016772
description uncharacterized aarf domain-containing protein kinase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28630: 39205-39470 , PASA_asmbl_28631: 39766-40417 , PASA_asmbl_28632: 43069-44752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_050 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
2 Hb_003428_030 0.0683937931 - - tRNA, putative [Ricinus communis]
3 Hb_002253_100 0.0727381191 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
4 Hb_000093_160 0.0731372766 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
5 Hb_005618_160 0.0760396416 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
6 Hb_007672_060 0.0782707861 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
7 Hb_001586_040 0.0791735384 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
8 Hb_007163_070 0.0794835728 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
9 Hb_000120_790 0.0799780089 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
10 Hb_000960_060 0.0800708768 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
11 Hb_005731_050 0.0843822847 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
12 Hb_003125_120 0.0860739818 - - PREDICTED: TITAN-like protein [Jatropha curcas]
13 Hb_005697_060 0.0868324354 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
14 Hb_120410_010 0.0880347379 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
15 Hb_001234_080 0.0886549939 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
16 Hb_000038_170 0.0893945219 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
17 Hb_005288_190 0.0900630388 - - PREDICTED: exportin-4 [Jatropha curcas]
18 Hb_028227_020 0.0903554177 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
19 Hb_003010_030 0.0906648284 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
20 Hb_005725_250 0.0906666702 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002739_050 Hb_002739_050 Hb_003428_030 Hb_003428_030 Hb_002739_050--Hb_003428_030 Hb_002253_100 Hb_002253_100 Hb_002739_050--Hb_002253_100 Hb_000093_160 Hb_000093_160 Hb_002739_050--Hb_000093_160 Hb_005618_160 Hb_005618_160 Hb_002739_050--Hb_005618_160 Hb_007672_060 Hb_007672_060 Hb_002739_050--Hb_007672_060 Hb_001586_040 Hb_001586_040 Hb_002739_050--Hb_001586_040 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_014109_040 Hb_014109_040 Hb_002253_100--Hb_014109_040 Hb_000272_020 Hb_000272_020 Hb_002253_100--Hb_000272_020 Hb_007576_080 Hb_007576_080 Hb_002253_100--Hb_007576_080 Hb_005697_060 Hb_005697_060 Hb_002253_100--Hb_005697_060 Hb_003780_030 Hb_003780_030 Hb_002253_100--Hb_003780_030 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_000054_090 Hb_000054_090 Hb_007672_060--Hb_000054_090 Hb_001579_270 Hb_001579_270 Hb_007672_060--Hb_001579_270 Hb_000599_300 Hb_000599_300 Hb_007672_060--Hb_000599_300 Hb_033594_120 Hb_033594_120 Hb_007672_060--Hb_033594_120 Hb_007672_060--Hb_003428_030 Hb_000649_070 Hb_000649_070 Hb_001586_040--Hb_000649_070 Hb_001586_040--Hb_000174_110 Hb_001586_040--Hb_005618_160 Hb_001329_130 Hb_001329_130 Hb_001586_040--Hb_001329_130 Hb_010068_040 Hb_010068_040 Hb_001586_040--Hb_010068_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62373 2.03471 2.04165 2.12597 3.84691 3.09524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45618 4.44169 1.58063 1.57264 2.33585

CAGE analysis