Hb_000365_120

Information

Type -
Description -
Location Contig365: 119393-122494
Sequence    

Annotation

kegg
ID rcu:RCOM_1323540
description methylenetetrahydrofolate dehydrogenase, putative (EC:3.5.4.9)
nr
ID XP_012090958.1
description PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
swissprot
ID A2RVV7
description Bifunctional protein FolD 1, mitochondrial OS=Arabidopsis thaliana GN=FOLD1 PE=2 SV=1
trembl
ID A0A067JDB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00599 PE=3 SV=1
Gene Ontology
ID GO:0004477
description bifunctional protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37556: 119397-121961
cDNA
(Sanger)
(ID:Location)		 002_L05r.ab1: 122235-126466 , 037_H18.ab1: 119397-121033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_120 0.0 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
2 Hb_009421_020 0.0612822671 - - PREDICTED: caltractin-like [Jatropha curcas]
3 Hb_007632_030 0.0636145219 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
4 Hb_001390_110 0.0676213527 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
5 Hb_002141_030 0.0689937798 - - conserved hypothetical protein [Ricinus communis]
6 Hb_156973_010 0.073185267 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005697_060 0.0763468359 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
8 Hb_006913_030 0.0767746393 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
9 Hb_001936_060 0.0785569706 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_000390_180 0.0794532332 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
11 Hb_001258_090 0.0799163779 - - PREDICTED: protein spt2-like [Jatropha curcas]
12 Hb_000853_420 0.0807316683 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000038_170 0.0829492239 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
14 Hb_000403_050 0.0837547576 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
15 Hb_008055_040 0.0853296336 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
16 Hb_000329_140 0.0857439222 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
17 Hb_000236_240 0.0858183277 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
18 Hb_000883_020 0.0860710378 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_001512_060 0.0866634962 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
20 Hb_023386_020 0.087473197 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_120 Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_000365_120--Hb_009421_020 Hb_007632_030 Hb_007632_030 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_156973_010 Hb_156973_010 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_009421_020--Hb_007632_030 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_001936_060 Hb_001936_060 Hb_001390_110--Hb_001936_060 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_000390_180 Hb_000390_180 Hb_001390_110--Hb_000390_180 Hb_000853_230 Hb_000853_230 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_002490_020 Hb_002490_020 Hb_002141_030--Hb_002490_020 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_156973_010--Hb_000853_230 Hb_156973_010--Hb_000403_050 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_028227_020 Hb_028227_020 Hb_005697_060--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3671 6.78476 8.74401 4.64061 13.1398 10.3939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4347 13.3499 8.16655 7.70174 8.54307

CAGE analysis