Hb_000486_010

Information

Type -
Description -
Location Contig486: 41872-44894
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09590g
description POPTRDRAFT_560859; KOW domain-containing transcription factor family protein
nr
ID XP_012087952.1
description PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
swissprot
ID P35872
description Transcription termination/antitermination protein NusG OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nusG PE=1 SV=1
trembl
ID A0A067JKJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25075 PE=4 SV=1
Gene Ontology
ID GO:0006355
description kow domain-containing transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44982: 42045-44809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000486_010 0.0 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
2 Hb_000300_610 0.0772667132 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
3 Hb_063090_010 0.0804537436 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
4 Hb_005306_170 0.0822294104 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_003333_060 0.0864370284 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
6 Hb_000627_030 0.0867347366 - - amine oxidase, putative [Ricinus communis]
7 Hb_000329_140 0.0893959659 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
8 Hb_002284_090 0.090283893 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
9 Hb_000373_240 0.0930381499 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
10 Hb_004970_110 0.0950276061 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
11 Hb_000599_110 0.0950353183 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000889_020 0.096150337 - - ribosome biogenesis protein brix, putative [Ricinus communis]
13 Hb_009133_010 0.09818979 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
14 Hb_003398_130 0.0988151117 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
15 Hb_032258_030 0.1030780151 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
16 Hb_118707_030 0.1033151151 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
17 Hb_001350_010 0.1035551678 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
18 Hb_105123_010 0.1041958227 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
19 Hb_000058_100 0.1043471836 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
20 Hb_002079_010 0.1054031861 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]

Gene co-expression network

sample Hb_000486_010 Hb_000486_010 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140 Hb_009954_040 Hb_009954_040 Hb_000300_610--Hb_009954_040 Hb_012338_010 Hb_012338_010 Hb_000300_610--Hb_012338_010 Hb_000061_320 Hb_000061_320 Hb_000300_610--Hb_000061_320 Hb_002685_190 Hb_002685_190 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_018838_030 Hb_018838_030 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_012725_050 Hb_012725_050 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_028227_020 Hb_028227_020 Hb_005306_170--Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_005306_170--Hb_001157_020 Hb_005306_170--Hb_000329_140 Hb_008406_190 Hb_008406_190 Hb_003333_060--Hb_008406_190 Hb_000103_080 Hb_000103_080 Hb_003333_060--Hb_000103_080 Hb_010423_040 Hb_010423_040 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_003333_060--Hb_063090_010 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_012490_030 Hb_012490_030 Hb_000627_030--Hb_012490_030 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_003673_060 Hb_003673_060 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_002728_070 Hb_002728_070 Hb_000329_140--Hb_002728_070 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7942 5.22931 9.40187 7.22947 24.6619 31.5133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.17 26.368 14.2304 18.1561 16.8809

CAGE analysis