Hb_001278_110

Information

Type -
Description -
Location Contig1278: 147990-152827
Sequence    

Annotation

kegg
ID pvu:PHAVU_007G032000g
description hypothetical protein
nr
ID XP_010279363.1
description PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID V7BER2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G032000g PE=4 SV=1
Gene Ontology
ID GO:0003824
description PREDICTED: uncharacterized protein LOC104613296 isoform X3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08557: 147892-152827
cDNA
(Sanger)
(ID:Location)		 023_J12.ab1: 147894-150039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_110 0.0 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
2 Hb_002685_190 0.0717247866 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
3 Hb_003266_050 0.0783469599 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
4 Hb_004297_070 0.0837836859 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
5 Hb_002284_090 0.085671963 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
6 Hb_181288_010 0.085964173 - - rac-GTP binding protein, putative [Ricinus communis]
7 Hb_000300_610 0.0869829375 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
8 Hb_000317_340 0.0922434907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000465_060 0.0924203548 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
10 Hb_143629_230 0.0932113467 - - ring finger, putative [Ricinus communis]
11 Hb_000120_760 0.0939746634 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
12 Hb_000365_380 0.0943877444 - - conserved hypothetical protein [Ricinus communis]
13 Hb_032202_090 0.0945386633 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
14 Hb_118707_030 0.0953257424 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
15 Hb_000815_040 0.0955356422 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
16 Hb_003874_020 0.0957197483 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
17 Hb_004204_120 0.0963609289 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
18 Hb_004440_050 0.0991358365 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
19 Hb_009954_040 0.1000321045 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
20 Hb_071130_030 0.1001916407 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]

Gene co-expression network

sample Hb_001278_110 Hb_001278_110 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_010691_060 Hb_010691_060 Hb_003266_050--Hb_010691_060 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_001377_150 Hb_001377_150 Hb_004297_070--Hb_001377_150 Hb_004297_070--Hb_181288_010 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_003398_130 Hb_003398_130 Hb_002284_090--Hb_003398_130 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_019249_010 Hb_019249_010 Hb_181288_010--Hb_019249_010 Hb_128048_010 Hb_128048_010 Hb_181288_010--Hb_128048_010 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_181288_010--Hb_002518_050 Hb_002105_090 Hb_002105_090 Hb_181288_010--Hb_002105_090 Hb_000300_610--Hb_009954_040 Hb_012338_010 Hb_012338_010 Hb_000300_610--Hb_012338_010 Hb_000300_610--Hb_000486_010 Hb_000061_320 Hb_000061_320 Hb_000300_610--Hb_000061_320 Hb_000300_610--Hb_002685_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6235 1.21757 1.9336 1.71917 3.84672 6.58497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.62022 7.52298 2.29197 2.13513 2.2394

CAGE analysis