Hb_033594_110

Information

Type -
Description -
Location Contig33594: 87463-91345
Sequence    

Annotation

kegg
ID rcu:RCOM_0580980
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative (EC:1.6.99.3)
nr
ID XP_002525280.1
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9FJW4
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
trembl
ID B9SH11
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial, putative OS=Ricinus communis GN=RCOM_0580980 PE=4 SV=1
Gene Ontology
ID GO:0016651
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35141: 88554-91379 , PASA_asmbl_35142: 88874-90643 , PASA_asmbl_35143: 87677-91379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_110 0.0 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000630_060 0.0566248129 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
3 Hb_003126_090 0.0626433213 - - Rop1 [Hevea brasiliensis]
4 Hb_165132_010 0.0679992912 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_134949_020 0.0689366151 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
6 Hb_145880_030 0.0731675315 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
7 Hb_001016_030 0.0753842837 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
8 Hb_181288_010 0.0815160971 - - rac-GTP binding protein, putative [Ricinus communis]
9 Hb_002518_050 0.0816913424 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
10 Hb_001817_090 0.0825474811 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
11 Hb_000201_120 0.0829446873 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
12 Hb_002030_040 0.0829743348 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
13 Hb_000934_250 0.0837250375 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
14 Hb_077354_010 0.0855538728 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
15 Hb_000987_070 0.0862857375 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
16 Hb_010407_040 0.0872156359 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
17 Hb_004204_120 0.0874629641 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
18 Hb_030736_080 0.0886504966 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002289_120 0.0894311366 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
20 Hb_001279_310 0.0896554701 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_033594_110 Hb_033594_110 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_165132_010 Hb_165132_010 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_003126_090--Hb_001016_030 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_002830_020 Hb_002830_020 Hb_003126_090--Hb_002830_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_001016_030--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1856 12.6654 20.1062 24.121 24.1771 25.2138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.916 57.6108 23.5438 10.3001 8.68231

CAGE analysis