Hb_065525_020

Information

Type -
Description -
Location Contig65525: 21893-27172
Sequence    

Annotation

kegg
ID rcu:RCOM_0996650
description geranylgeranyl transferase type I beta subunit, putative (EC:2.5.1.60)
nr
ID XP_012089421.1
description PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
swissprot
ID O80642
description Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1
trembl
ID A0A067L989
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01482 PE=4 SV=1
Gene Ontology
ID GO:0004662
description geranylgeranyl transferase type-1 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52662: 18361-21270 , PASA_asmbl_52663: 24786-26895 , PASA_asmbl_52664: 23299-27146 , PASA_asmbl_52665: 23299-26868 , PASA_asmbl_52666: 21896-24544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_020 0.0 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
2 Hb_009773_020 0.0667846192 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
3 Hb_002030_040 0.0695150819 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
4 Hb_158467_010 0.0695764855 - - transporter, putative [Ricinus communis]
5 Hb_010042_010 0.0714121857 - - Urease accessory protein ureD, putative [Ricinus communis]
6 Hb_000934_250 0.0721862071 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_001105_070 0.0733310434 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
8 Hb_000987_070 0.0733477795 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
9 Hb_012053_070 0.0763238262 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
10 Hb_172426_040 0.0783949783 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
11 Hb_000329_030 0.083003129 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
12 Hb_032717_080 0.0836907569 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_003126_090 0.0862254166 - - Rop1 [Hevea brasiliensis]
14 Hb_000201_120 0.0878618276 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
15 Hb_001833_110 0.0880461185 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000840_030 0.0881228976 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
17 Hb_004324_310 0.0888229099 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001318_250 0.0889992513 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
19 Hb_000020_060 0.0908495485 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
20 Hb_015807_040 0.0908826981 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]

Gene co-expression network

sample Hb_065525_020 Hb_065525_020 Hb_009773_020 Hb_009773_020 Hb_065525_020--Hb_009773_020 Hb_002030_040 Hb_002030_040 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250 Hb_001105_070 Hb_001105_070 Hb_065525_020--Hb_001105_070 Hb_009773_020--Hb_002030_040 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_009773_020--Hb_001105_070 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_002030_040--Hb_000840_030 Hb_004204_120 Hb_004204_120 Hb_002030_040--Hb_004204_120 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310 Hb_032264_110 Hb_032264_110 Hb_158467_010--Hb_032264_110 Hb_012053_070 Hb_012053_070 Hb_158467_010--Hb_012053_070 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_158467_010--Hb_009773_020 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_001318_250 Hb_001318_250 Hb_000934_250--Hb_001318_250 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000934_250--Hb_152784_010 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2204 5.56637 8.19107 11.9914 10.4653 14.0539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7634 19.7667 17.6435 8.28748 4.14956

CAGE analysis