Hb_158467_010

Information

Type -
Description -
Location Contig158467: 2873-9556
Sequence    

Annotation

kegg
ID rcu:RCOM_1259420
description transporter, putative
nr
ID XP_002530538.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9AST6
description Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1
trembl
ID B9SX19
description Transporter, putative OS=Ricinus communis GN=RCOM_1259420 PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar protein sorting-associated protein 55 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14033: 1970-9512 , PASA_asmbl_14034: 4300-4675
cDNA
(Sanger)
(ID:Location)		 012_L20.ab1: 1977-9434 , 015_J15.ab1: 1970-9427 , 031_F20.ab1: 1967-9481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158467_010 0.0 - - transporter, putative [Ricinus communis]
2 Hb_032264_110 0.0510090221 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
3 Hb_012053_070 0.0688352793 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
4 Hb_000671_090 0.0688495609 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
5 Hb_065525_020 0.0695764855 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
6 Hb_000638_250 0.070077403 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_009773_020 0.0741461728 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
8 Hb_000009_160 0.0754072914 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
9 Hb_101705_030 0.0754683973 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_001105_070 0.0755405279 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
11 Hb_000510_320 0.0757984089 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
12 Hb_153112_020 0.079818363 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
13 Hb_010042_010 0.0806113409 - - Urease accessory protein ureD, putative [Ricinus communis]
14 Hb_000579_140 0.0806612792 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010422_060 0.0815463921 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
16 Hb_001009_270 0.0815586313 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
17 Hb_000329_030 0.0823448652 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
18 Hb_000240_090 0.0823481563 - - Rab5 [Hevea brasiliensis]
19 Hb_003125_010 0.0828077704 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
20 Hb_032208_090 0.0829147855 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_158467_010 Hb_158467_010 Hb_032264_110 Hb_032264_110 Hb_158467_010--Hb_032264_110 Hb_012053_070 Hb_012053_070 Hb_158467_010--Hb_012053_070 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_065525_020 Hb_065525_020 Hb_158467_010--Hb_065525_020 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_009773_020 Hb_009773_020 Hb_158467_010--Hb_009773_020 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_000979_230 Hb_000979_230 Hb_000671_090--Hb_000979_230 Hb_000270_370 Hb_000270_370 Hb_000671_090--Hb_000270_370 Hb_000834_270 Hb_000834_270 Hb_000671_090--Hb_000834_270 Hb_065525_020--Hb_009773_020 Hb_002030_040 Hb_002030_040 Hb_065525_020--Hb_002030_040 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250 Hb_065525_020--Hb_001105_070 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_009773_020--Hb_002030_040 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_009773_020--Hb_001105_070 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5762 6.71729 10.4035 14.3354 15.4292 18.1523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.993 27.1075 29.1813 11.2303 6.46119

CAGE analysis