Hb_019249_010

Information

Type -
Description -
Location Contig19249: 8032-9883
Sequence    

Annotation

kegg
ID rcu:RCOM_1248790
description plant origin recognition complex subunit, putative
nr
ID XP_012074904.1
description PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
swissprot
ID Q38899
description Origin of replication complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1
trembl
ID A0A067KTL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09048 PE=4 SV=1
Gene Ontology
ID GO:0000808
description origin recognition complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19172: 8177-9963 , PASA_asmbl_19173: 8069-9943 , PASA_asmbl_19174: 8177-9963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019249_010 0.0 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
2 Hb_181288_010 0.0725023115 - - rac-GTP binding protein, putative [Ricinus communis]
3 Hb_128048_010 0.0791455698 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_002289_120 0.0819370055 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
5 Hb_001814_070 0.0884910308 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
6 Hb_001817_090 0.0902563502 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
7 Hb_003878_010 0.0924063393 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
8 Hb_033594_110 0.0935217212 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
9 Hb_001369_660 0.094240959 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
10 Hb_001936_080 0.0946903685 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
11 Hb_168054_010 0.0950033891 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
12 Hb_000457_110 0.0950666883 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
13 Hb_010407_040 0.095167596 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
14 Hb_175215_010 0.0958080819 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
15 Hb_000163_160 0.0980093529 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
16 Hb_000630_060 0.0991573082 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
17 Hb_000926_300 0.0995512291 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
18 Hb_002811_260 0.1005150642 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_032202_090 0.1021864109 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
20 Hb_004440_050 0.1053565446 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]

Gene co-expression network

sample Hb_019249_010 Hb_019249_010 Hb_181288_010 Hb_181288_010 Hb_019249_010--Hb_181288_010 Hb_128048_010 Hb_128048_010 Hb_019249_010--Hb_128048_010 Hb_002289_120 Hb_002289_120 Hb_019249_010--Hb_002289_120 Hb_001814_070 Hb_001814_070 Hb_019249_010--Hb_001814_070 Hb_001817_090 Hb_001817_090 Hb_019249_010--Hb_001817_090 Hb_003878_010 Hb_003878_010 Hb_019249_010--Hb_003878_010 Hb_181288_010--Hb_128048_010 Hb_004204_120 Hb_004204_120 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_181288_010--Hb_002518_050 Hb_002105_090 Hb_002105_090 Hb_181288_010--Hb_002105_090 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_128048_010--Hb_003878_010 Hb_002289_120--Hb_001814_070 Hb_000152_420 Hb_000152_420 Hb_002289_120--Hb_000152_420 Hb_001369_640 Hb_001369_640 Hb_002289_120--Hb_001369_640 Hb_002289_120--Hb_128048_010 Hb_002289_120--Hb_003878_010 Hb_001814_070--Hb_003878_010 Hb_001814_070--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_001814_070--Hb_007875_030 Hb_001016_030 Hb_001016_030 Hb_001814_070--Hb_001016_030 Hb_005045_060 Hb_005045_060 Hb_001817_090--Hb_005045_060 Hb_001817_090--Hb_033594_110 Hb_000457_110 Hb_000457_110 Hb_001817_090--Hb_000457_110 Hb_165132_010 Hb_165132_010 Hb_001817_090--Hb_165132_010 Hb_145880_030 Hb_145880_030 Hb_001817_090--Hb_145880_030 Hb_001817_090--Hb_002811_260 Hb_003878_010--Hb_007875_030 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.62044 3.61832 5.45919 5.40609 6.48826 9.822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0042 14.1177 3.5706 2.23292 2.90905

CAGE analysis