Hb_001817_090

Information

Type -
Description -
Location Contig1817: 77111-81467
Sequence    

Annotation

kegg
ID tcc:TCM_004126
description BET1P/SFT1P-like protein 14A isoform 1
nr
ID XP_012092079.1
description PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
swissprot
ID Q9M2J9
description Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1
trembl
ID A0A067JC10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21803 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bet1-like snare 1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17661: 77174-81429 , PASA_asmbl_17662: 80868-81009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_090 0.0 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
2 Hb_005045_060 0.079025429 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
3 Hb_033594_110 0.0825474811 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000457_110 0.0858011668 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
5 Hb_165132_010 0.0869871339 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_145880_030 0.087188466 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
7 Hb_002811_260 0.0874883079 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
8 Hb_003683_050 0.0883333147 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
9 Hb_078185_010 0.088899865 - - -
10 Hb_000630_060 0.0894842129 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
11 Hb_001341_090 0.0900105604 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
12 Hb_019249_010 0.0902563502 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
13 Hb_024071_020 0.0915696321 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_134949_020 0.0916292265 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
15 Hb_003687_110 0.0918490093 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
16 Hb_005731_050 0.093422765 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
17 Hb_000186_190 0.094521856 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
18 Hb_000679_300 0.0951125132 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
19 Hb_001662_070 0.0958788747 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
20 Hb_002289_120 0.0964321981 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001817_090 Hb_001817_090 Hb_005045_060 Hb_005045_060 Hb_001817_090--Hb_005045_060 Hb_033594_110 Hb_033594_110 Hb_001817_090--Hb_033594_110 Hb_000457_110 Hb_000457_110 Hb_001817_090--Hb_000457_110 Hb_165132_010 Hb_165132_010 Hb_001817_090--Hb_165132_010 Hb_145880_030 Hb_145880_030 Hb_001817_090--Hb_145880_030 Hb_002811_260 Hb_002811_260 Hb_001817_090--Hb_002811_260 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_004032_010 Hb_004032_010 Hb_005045_060--Hb_004032_010 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_001489_060 Hb_001489_060 Hb_005045_060--Hb_001489_060 Hb_005045_060--Hb_002811_260 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000465_430 Hb_000465_430 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_000465_040 Hb_000465_040 Hb_000457_110--Hb_000465_040 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1842 18.8799 30.0279 42.9087 42.9516 41.7826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1883 71.7721 31.2104 11.7115 12.8444

CAGE analysis