Hb_002811_260

Information

Type -
Description -
Location Contig2811: 200703-203524
Sequence    

Annotation

kegg
ID rcu:RCOM_1427670
description hypothetical protein
nr
ID XP_012089246.1
description PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
swissprot
ID Q9SQZ9
description PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2
trembl
ID A0A067JIE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23485 PE=4 SV=1
Gene Ontology
ID GO:0015035
description pith domain-containing protein at3g04780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_260 0.0 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
2 Hb_021419_020 0.066370362 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
3 Hb_128048_010 0.0677044175 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_005773_060 0.0699433918 - - defender against cell death, putative [Ricinus communis]
5 Hb_001195_480 0.0719091305 - - cop9 complex subunit, putative [Ricinus communis]
6 Hb_005045_060 0.0777147806 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
7 Hb_001328_040 0.0785492848 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
8 Hb_003363_110 0.080378899 - - protein with unknown function [Ricinus communis]
9 Hb_004453_170 0.0813225294 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
10 Hb_001534_120 0.0814840831 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
11 Hb_024071_020 0.0823150177 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
12 Hb_010407_040 0.0838395921 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
13 Hb_000562_030 0.0859524674 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000815_320 0.0869246602 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
15 Hb_007477_070 0.087199635 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
16 Hb_134949_020 0.0873610796 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
17 Hb_001817_090 0.0874883079 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
18 Hb_001662_070 0.087716652 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
19 Hb_004800_230 0.0883231892 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
20 Hb_165132_010 0.0883348829 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]

Gene co-expression network

sample Hb_002811_260 Hb_002811_260 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_003544_020 Hb_003544_020 Hb_005773_060--Hb_003544_020 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_004032_010 Hb_004032_010 Hb_005045_060--Hb_004032_010 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_001489_060 Hb_001489_060 Hb_005045_060--Hb_001489_060 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3562 7.82842 22.3605 16.9344 19.6475 21.3703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4132 41.5413 14.3448 11.5573 6.19518

CAGE analysis