Hb_175215_010

Information

Type -
Description -
Location Contig175215: 597-1337
Sequence    

Annotation

kegg
ID cit:102607085
description 40S ribosomal protein S7-like
nr
ID KDO57480.1
description hypothetical protein CISIN_1g029605mg [Citrus sinensis]
swissprot
ID Q9C514
description 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1
trembl
ID A0A067EUA6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029605mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16770: 606-1283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175215_010 0.0 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
2 Hb_128048_010 0.0704932121 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
3 Hb_009486_150 0.0777792494 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
4 Hb_001504_020 0.0779486976 - - 40S ribosomal protein S12A [Hevea brasiliensis]
5 Hb_004787_060 0.0832033293 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_021419_020 0.0865561662 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
7 Hb_000926_300 0.0871956064 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
8 Hb_002112_020 0.0886282495 - - 60S ribosomal protein L9, putative [Ricinus communis]
9 Hb_012573_070 0.0889881452 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002811_260 0.0897796625 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_003528_060 0.0907016435 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
12 Hb_010921_010 0.0920810384 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
13 Hb_011381_060 0.0943729329 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
14 Hb_019249_010 0.0958080819 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
15 Hb_064264_010 0.0961934834 - - hypothetical protein [Zea mays]
16 Hb_000057_070 0.0962329207 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
17 Hb_001538_120 0.0971652159 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
18 Hb_002374_170 0.0989157867 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
19 Hb_000000_170 0.1035717 - - defender against cell death, putative [Ricinus communis]
20 Hb_002868_010 0.1037079972 - - 60S ribosomal protein L30, putative [Ricinus communis]

Gene co-expression network

sample Hb_175215_010 Hb_175215_010 Hb_128048_010 Hb_128048_010 Hb_175215_010--Hb_128048_010 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_004787_060 Hb_004787_060 Hb_175215_010--Hb_004787_060 Hb_021419_020 Hb_021419_020 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_004052_020 Hb_004052_020 Hb_009486_150--Hb_004052_020 Hb_009486_150--Hb_021419_020 Hb_000565_030 Hb_000565_030 Hb_009486_150--Hb_000565_030 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_002112_020 Hb_002112_020 Hb_001504_020--Hb_002112_020 Hb_001504_020--Hb_021419_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_001504_020--Hb_010921_010 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_004787_060--Hb_010921_010 Hb_021419_020--Hb_002811_260 Hb_021419_020--Hb_002112_020 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.7224 35.4394 81.1191 38.9757 85.6699 107.374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.338 198.811 39.4913 51.1876 28.3912

CAGE analysis