Hb_000565_030

Information

Type -
Description -
Location Contig565: 37646-39546
Sequence    

Annotation

kegg
ID gmx:100784958
description 40S ribosomal protein S26-1-like
nr
ID XP_012089082.1
description PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
swissprot
ID P49206
description 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2
trembl
ID A0A067L911
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01446 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s26-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48984: 37587-39558 , PASA_asmbl_48985: 38051-38457
cDNA
(Sanger)
(ID:Location)		 002_E06.ab1: 37685-39558 , 016_C07.ab1: 37724-39555 , 025_B12.ab1: 37696-39494 , 028_A24.ab1: 38940-39555 , 043_M05.ab1: 37673-39543

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000565_030 0.0 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
2 Hb_000157_090 0.0690919998 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
3 Hb_009486_150 0.1037537793 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
4 Hb_004052_020 0.1079790633 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
5 Hb_002742_050 0.1110439336 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
6 Hb_012573_070 0.1166682673 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001314_100 0.1177033971 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
8 Hb_175215_010 0.118430434 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
9 Hb_000057_070 0.1188250784 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
10 Hb_000948_210 0.121136547 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_000152_420 0.1213401866 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
12 Hb_002289_120 0.1217126377 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
13 Hb_033153_090 0.1225230132 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
14 Hb_000046_560 0.1253107524 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
15 Hb_126216_010 0.1253486845 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
16 Hb_064264_010 0.1274158777 - - hypothetical protein [Zea mays]
17 Hb_168054_010 0.1275968786 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
18 Hb_000506_070 0.1284156547 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
19 Hb_001279_310 0.1308847631 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
20 Hb_003018_120 0.131451235 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_000565_030 Hb_000565_030 Hb_000157_090 Hb_000157_090 Hb_000565_030--Hb_000157_090 Hb_009486_150 Hb_009486_150 Hb_000565_030--Hb_009486_150 Hb_004052_020 Hb_004052_020 Hb_000565_030--Hb_004052_020 Hb_002742_050 Hb_002742_050 Hb_000565_030--Hb_002742_050 Hb_012573_070 Hb_012573_070 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_033153_090 Hb_033153_090 Hb_000157_090--Hb_033153_090 Hb_001377_150 Hb_001377_150 Hb_000157_090--Hb_001377_150 Hb_004297_070 Hb_004297_070 Hb_000157_090--Hb_004297_070 Hb_168054_010 Hb_168054_010 Hb_000157_090--Hb_168054_010 Hb_000157_090--Hb_001314_100 Hb_175215_010 Hb_175215_010 Hb_009486_150--Hb_175215_010 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002742_050--Hb_004052_020 Hb_001214_140 Hb_001214_140 Hb_002742_050--Hb_001214_140 Hb_002742_050--Hb_000057_070 Hb_002742_050--Hb_009486_150 Hb_005496_030 Hb_005496_030 Hb_002742_050--Hb_005496_030 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_134949_020 Hb_134949_020 Hb_001314_100--Hb_134949_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
247.309 100.319 250.918 131.983 93.087 323.604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
341.217 659.255 120.123 119.695 44.2151

CAGE analysis