Hb_003058_080

Information

Type -
Description -
Location Contig3058: 71125-74415
Sequence    

Annotation

kegg
ID tcc:TCM_041007
description Chaperonin 10 isoform 1
nr
ID XP_007015380.1
description Chaperonin 10 isoform 1 [Theobroma cacao]
swissprot
ID P34893
description 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1
trembl
ID A0A0D2S1X4
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G122100 PE=4 SV=1
Gene Ontology
ID GO:0005737
description 10 kda chaperonin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32303: 68183-70405 , PASA_asmbl_32304: 71207-74354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_080 0.0 - - Chaperonin 10 isoform 1 [Theobroma cacao]
2 Hb_002783_270 0.0790267181 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
3 Hb_007044_130 0.0828824852 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
4 Hb_004052_020 0.0834820718 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
5 Hb_012753_230 0.1010473452 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
6 Hb_000046_560 0.1014719008 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
7 Hb_047823_010 0.1034746575 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
8 Hb_000297_230 0.1043791226 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
9 Hb_000062_650 0.1082005468 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
10 Hb_000948_210 0.1083723502 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_006925_040 0.1123604557 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
12 Hb_002900_160 0.1126392514 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
13 Hb_001512_050 0.1128472527 - - copine, putative [Ricinus communis]
14 Hb_001143_220 0.1130297476 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
15 Hb_003683_110 0.1140884118 - - JHL10I11.3 [Jatropha curcas]
16 Hb_000453_090 0.1143565186 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
17 Hb_003053_010 0.1156331176 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
18 Hb_000144_080 0.1161245166 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
19 Hb_003185_110 0.116157492 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
20 Hb_001141_140 0.1194004066 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003058_080 Hb_003058_080 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_002783_270--Hb_007044_130 Hb_002783_270--Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_002783_270--Hb_006925_040 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_007044_130--Hb_003894_070 Hb_007044_130--Hb_006925_040 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_000046_560--Hb_006925_040 Hb_003683_110 Hb_003683_110 Hb_000046_560--Hb_003683_110 Hb_000996_140 Hb_000996_140 Hb_000046_560--Hb_000996_140 Hb_000046_560--Hb_007044_130 Hb_004157_030 Hb_004157_030 Hb_000046_560--Hb_004157_030 Hb_047823_010--Hb_007044_130 Hb_002301_130 Hb_002301_130 Hb_047823_010--Hb_002301_130 Hb_003528_060 Hb_003528_060 Hb_047823_010--Hb_003528_060 Hb_013405_090 Hb_013405_090 Hb_047823_010--Hb_013405_090 Hb_129924_010 Hb_129924_010 Hb_047823_010--Hb_129924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.7112 23.763 92.7508 52.0949 62.2137 55.5749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.474 284.339 46.6425 22.3155 24.0146

CAGE analysis