Hb_129924_010

Information

Type -
Description -
Location Contig129924: 816-1779
Sequence    

Annotation

kegg
ID rcu:RCOM_1622060
description hypothetical protein
nr
ID XP_012067724.1
description PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L239
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15665 PE=4 SV=1
Gene Ontology
ID GO:0005739
description sporulation protein rmd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129924_010 0.0 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
2 Hb_002259_070 0.0934596266 - - taz protein, putative [Ricinus communis]
3 Hb_013405_090 0.0990633464 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
4 Hb_001538_120 0.1021341581 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
5 Hb_003528_060 0.1042911366 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
6 Hb_003683_110 0.1057165456 - - JHL10I11.3 [Jatropha curcas]
7 Hb_012753_230 0.106544834 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
8 Hb_047823_010 0.1077705442 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
9 Hb_007416_030 0.1109736338 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
10 Hb_010261_060 0.1110941723 - - unnamed protein product [Coffea canephora]
11 Hb_019253_030 0.1114585177 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
12 Hb_000453_090 0.1165649402 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
13 Hb_000510_110 0.1166716148 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
14 Hb_003927_140 0.1213932407 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
15 Hb_000127_180 0.1237448843 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_005322_040 0.1240562425 - - 60S ribosomal protein L9, putative [Ricinus communis]
17 Hb_001300_040 0.1247244932 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
18 Hb_002768_030 0.1254466693 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
19 Hb_012573_070 0.1254908337 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005511_160 0.1261552924 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_129924_010 Hb_129924_010 Hb_002259_070 Hb_002259_070 Hb_129924_010--Hb_002259_070 Hb_013405_090 Hb_013405_090 Hb_129924_010--Hb_013405_090 Hb_001538_120 Hb_001538_120 Hb_129924_010--Hb_001538_120 Hb_003528_060 Hb_003528_060 Hb_129924_010--Hb_003528_060 Hb_003683_110 Hb_003683_110 Hb_129924_010--Hb_003683_110 Hb_012753_230 Hb_012753_230 Hb_129924_010--Hb_012753_230 Hb_019253_030 Hb_019253_030 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_002259_070--Hb_012753_230 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_013405_090--Hb_003528_060 Hb_013405_090--Hb_001538_120 Hb_005322_040 Hb_005322_040 Hb_013405_090--Hb_005322_040 Hb_000012_220 Hb_000012_220 Hb_013405_090--Hb_000012_220 Hb_013405_090--Hb_010261_060 Hb_001538_120--Hb_003528_060 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_001538_120--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_001538_120--Hb_001818_020 Hb_003528_060--Hb_012573_070 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_003683_110--Hb_001780_040 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_004052_020 Hb_004052_020 Hb_012753_230--Hb_004052_020 Hb_000948_210 Hb_000948_210 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4192 6.65854 16.7707 6.52479 27.4239 15.618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5225 63.0046 16.5038 5.66236 10.4

CAGE analysis