Hb_000948_210

Information

Type -
Description -
Location Contig948: 205908-210496
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08450g
description POPTRDRAFT_819156; hypothetical protein
nr
ID XP_012066497.1
description PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LCY2
description Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2
trembl
ID A0A067L6D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23688 PE=4 SV=1
Gene Ontology
ID GO:0005198
description iron-sulfur assembly mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63329: 205943-208948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_210 0.0 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
2 Hb_000617_090 0.0781332635 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
3 Hb_012753_230 0.079482676 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
4 Hb_012573_070 0.0856229767 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004052_020 0.0875406967 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
6 Hb_000510_110 0.0893969273 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
7 Hb_000297_230 0.0906034474 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
8 Hb_000062_650 0.0937465669 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
9 Hb_002768_030 0.0941505805 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_003018_120 0.0946092139 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
11 Hb_000046_560 0.0949402132 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
12 Hb_003683_110 0.0952747127 - - JHL10I11.3 [Jatropha curcas]
13 Hb_019516_100 0.0960948704 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_001780_040 0.0967913218 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
15 Hb_182305_020 0.0970908577 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_000545_150 0.0976309485 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_003053_010 0.0985983983 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
18 Hb_001300_040 0.0998932992 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
19 Hb_001269_270 0.1002121309 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_002588_010 0.1002514793 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_000948_210 Hb_000948_210 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_012753_230 Hb_012753_230 Hb_000948_210--Hb_012753_230 Hb_012573_070 Hb_012573_070 Hb_000948_210--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000948_210--Hb_004052_020 Hb_000510_110 Hb_000510_110 Hb_000948_210--Hb_000510_110 Hb_000297_230 Hb_000297_230 Hb_000948_210--Hb_000297_230 Hb_000312_090 Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150 Hb_012753_230--Hb_004052_020 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_000510_110--Hb_003683_110 Hb_003053_010 Hb_003053_010 Hb_000297_230--Hb_003053_010 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_000297_230--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.1848 8.18523 26.0099 18.92 18.2616 31.0532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.3584 113.39 29.2115 13.896 11.3945

CAGE analysis