Hb_002217_050

Information

Type -
Description -
Location Contig2217: 37925-40228
Sequence    

Annotation

kegg
ID vvi:100258064
description uncharacterized LOC100258064
nr
ID XP_010270900.1
description PREDICTED: uncharacterized protein LOC104607091 isoform X1 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID D7T656
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22870: 38002-40408 , PASA_asmbl_22871: 39393-39681 , PASA_asmbl_22872: 41173-43227
cDNA
(Sanger)
(ID:Location)		 003_A05.ab1: 38041-40396 , 008_D18.ab1: 38084-40381 , 012_C22.ab1: 38084-40381 , 043_M11.ab1: 38084-40381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_050 0.0 - - PREDICTED: uncharacterized protein LOC104607091 isoform X1 [Nelumbo nucifera]
2 Hb_000297_230 0.0930518939 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
3 Hb_000261_080 0.1061503855 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
4 Hb_003053_010 0.1118748032 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
5 Hb_001832_060 0.1139673399 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
6 Hb_001300_040 0.1151668986 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
7 Hb_006831_130 0.1167150741 - - catalytic, putative [Ricinus communis]
8 Hb_001141_140 0.1167876482 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_002454_030 0.1171852454 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
10 Hb_000453_090 0.1182670155 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
11 Hb_021596_090 0.118703463 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
12 Hb_004375_140 0.1189481714 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
13 Hb_126861_010 0.1191552964 - - hypothetical protein M569_05914, partial [Genlisea aurea]
14 Hb_002768_030 0.1200993807 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
15 Hb_001277_070 0.1208529386 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
16 Hb_002234_070 0.1226519057 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
17 Hb_000025_230 0.1246378412 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
18 Hb_010175_040 0.1247314305 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
19 Hb_000684_270 0.1251960493 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
20 Hb_003581_150 0.1257626483 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]

Gene co-expression network

sample Hb_002217_050 Hb_002217_050 Hb_000297_230 Hb_000297_230 Hb_002217_050--Hb_000297_230 Hb_000261_080 Hb_000261_080 Hb_002217_050--Hb_000261_080 Hb_003053_010 Hb_003053_010 Hb_002217_050--Hb_003053_010 Hb_001832_060 Hb_001832_060 Hb_002217_050--Hb_001832_060 Hb_001300_040 Hb_001300_040 Hb_002217_050--Hb_001300_040 Hb_006831_130 Hb_006831_130 Hb_002217_050--Hb_006831_130 Hb_000297_230--Hb_003053_010 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_000948_210 Hb_000948_210 Hb_000297_230--Hb_000948_210 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110 Hb_000059_360 Hb_000059_360 Hb_000261_080--Hb_000059_360 Hb_004586_320 Hb_004586_320 Hb_000261_080--Hb_004586_320 Hb_004375_140 Hb_004375_140 Hb_000261_080--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000261_080--Hb_003077_040 Hb_000103_010 Hb_000103_010 Hb_000261_080--Hb_000103_010 Hb_006925_040 Hb_006925_040 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_000453_090 Hb_000453_090 Hb_001300_040--Hb_000453_090 Hb_000510_110 Hb_000510_110 Hb_001300_040--Hb_000510_110 Hb_002999_050 Hb_002999_050 Hb_001300_040--Hb_002999_050 Hb_010672_070 Hb_010672_070 Hb_001300_040--Hb_010672_070 Hb_001300_040--Hb_001780_040 Hb_000029_200 Hb_000029_200 Hb_001300_040--Hb_000029_200 Hb_006831_130--Hb_002768_030 Hb_000035_370 Hb_000035_370 Hb_006831_130--Hb_000035_370 Hb_010175_040 Hb_010175_040 Hb_006831_130--Hb_010175_040 Hb_006831_130--Hb_004453_170 Hb_000996_140 Hb_000996_140 Hb_006831_130--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_006831_130--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.2837 10.5543 36.4049 14.5606 21.9986 14.3868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.8134 82.4537 44.1317 16.9024 6.7075

CAGE analysis