Hb_077354_010

Information

Type -
Description -
Location Contig77354: 1898-3413
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14840g
description POPTRDRAFT_832972; hypothetical protein
nr
ID XP_012076446.1
description PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07098 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57711: 1898-3299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077354_010 0.0 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
2 Hb_002234_070 0.0841280654 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
3 Hb_033594_110 0.0855538728 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
4 Hb_003018_120 0.0886604045 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_000684_270 0.0935401245 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
6 Hb_000297_230 0.0998262139 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
7 Hb_006831_130 0.1005454886 - - catalytic, putative [Ricinus communis]
8 Hb_002768_030 0.1007734757 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_004871_020 0.1025454543 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
10 Hb_134949_020 0.1036490828 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
11 Hb_001832_060 0.1073047534 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
12 Hb_000996_140 0.1090338858 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
13 Hb_003683_110 0.1095595202 - - JHL10I11.3 [Jatropha curcas]
14 Hb_004934_110 0.1101397803 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
15 Hb_001476_080 0.111095333 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
16 Hb_003185_110 0.1112530249 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
17 Hb_004453_170 0.1123259485 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
18 Hb_002045_040 0.112561937 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_003125_190 0.1134109322 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
20 Hb_010106_010 0.1134939398 - - PREDICTED: cucumisin-like [Populus euphratica]

Gene co-expression network

sample Hb_077354_010 Hb_077354_010 Hb_002234_070 Hb_002234_070 Hb_077354_010--Hb_002234_070 Hb_033594_110 Hb_033594_110 Hb_077354_010--Hb_033594_110 Hb_003018_120 Hb_003018_120 Hb_077354_010--Hb_003018_120 Hb_000684_270 Hb_000684_270 Hb_077354_010--Hb_000684_270 Hb_000297_230 Hb_000297_230 Hb_077354_010--Hb_000297_230 Hb_006831_130 Hb_006831_130 Hb_077354_010--Hb_006831_130 Hb_002234_070--Hb_000684_270 Hb_134949_020 Hb_134949_020 Hb_002234_070--Hb_134949_020 Hb_144598_020 Hb_144598_020 Hb_002234_070--Hb_144598_020 Hb_003125_150 Hb_003125_150 Hb_002234_070--Hb_003125_150 Hb_000987_070 Hb_000987_070 Hb_002234_070--Hb_000987_070 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_165132_010 Hb_165132_010 Hb_033594_110--Hb_165132_010 Hb_033594_110--Hb_134949_020 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_002518_050 Hb_002518_050 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_000798_030 Hb_000798_030 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_000525_020 Hb_000525_020 Hb_000684_270--Hb_000525_020 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_004871_020 Hb_004871_020 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030 Hb_003053_010 Hb_003053_010 Hb_000297_230--Hb_003053_010 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_000948_210 Hb_000948_210 Hb_000297_230--Hb_000948_210 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110 Hb_006831_130--Hb_002768_030 Hb_000035_370 Hb_000035_370 Hb_006831_130--Hb_000035_370 Hb_010175_040 Hb_010175_040 Hb_006831_130--Hb_010175_040 Hb_004453_170 Hb_004453_170 Hb_006831_130--Hb_004453_170 Hb_000996_140 Hb_000996_140 Hb_006831_130--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_006831_130--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5906 6.12061 9.24431 7.48771 6.0929 6.86352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7632 25.6158 8.20402 3.97136 4.13928

CAGE analysis