Hb_000035_370

Information

Type -
Description -
Location Contig35: 380183-382262
Sequence    

Annotation

kegg
ID rcu:RCOM_0920390
description hypothetical protein
nr
ID XP_002515395.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNS6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920390 PE=4 SV=1
Gene Ontology
ID GO:0031072
description hsp40 cysteine-rich domain superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36443: 380309-381873
cDNA
(Sanger)
(ID:Location)		 036_E03.ab1: 380316-381658

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001476_080 0.0759080626 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
3 Hb_000920_110 0.0762287569 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
4 Hb_002768_030 0.0763701135 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
5 Hb_000001_060 0.0768815982 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
6 Hb_006831_130 0.0777035287 - - catalytic, putative [Ricinus communis]
7 Hb_026053_020 0.0806607498 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
8 Hb_011512_070 0.0808157347 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_001123_130 0.0816436764 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000506_070 0.081896276 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_000731_190 0.0823282776 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
12 Hb_000527_060 0.0829439239 - - Protein C20orf11, putative [Ricinus communis]
13 Hb_001141_140 0.0836701187 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
14 Hb_010175_040 0.0840909371 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
15 Hb_001979_040 0.0841821434 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
16 Hb_000115_220 0.0842090578 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
17 Hb_003226_100 0.084678565 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
18 Hb_000261_140 0.0854305551 - - -
19 Hb_004143_150 0.0857833604 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
20 Hb_001863_430 0.0859103926 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]

Gene co-expression network

sample Hb_000035_370 Hb_000035_370 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000920_110 Hb_000920_110 Hb_000035_370--Hb_000920_110 Hb_002768_030 Hb_002768_030 Hb_000035_370--Hb_002768_030 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_006831_130 Hb_006831_130 Hb_000035_370--Hb_006831_130 Hb_026053_020 Hb_026053_020 Hb_000035_370--Hb_026053_020 Hb_001476_080--Hb_000001_060 Hb_001616_040 Hb_001616_040 Hb_001476_080--Hb_001616_040 Hb_004899_370 Hb_004899_370 Hb_001476_080--Hb_004899_370 Hb_000996_140 Hb_000996_140 Hb_001476_080--Hb_000996_140 Hb_001863_430 Hb_001863_430 Hb_001476_080--Hb_001863_430 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_000920_110--Hb_001616_040 Hb_003683_110 Hb_003683_110 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_002768_030--Hb_000996_140 Hb_002768_030--Hb_006831_130 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_000001_060--Hb_004899_370 Hb_003151_040 Hb_003151_040 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_006831_130--Hb_010175_040 Hb_004453_170 Hb_004453_170 Hb_006831_130--Hb_004453_170 Hb_006831_130--Hb_000996_140 Hb_006831_130--Hb_026053_020 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_026053_020--Hb_000996_140 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2321 17.2157 25.8219 16.6562 13.5244 18.0293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9499 66.0414 24.3602 13.9302 13.2915

CAGE analysis