Hb_000127_180

Information

Type -
Description -
Location Contig127: 214835-218092
Sequence    

Annotation

kegg
ID rcu:RCOM_0961900
description 40S ribosomal protein S18, putative
nr
ID XP_002524340.1
description 40S ribosomal protein S18, putative [Ricinus communis]
swissprot
ID P34788
description 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1
trembl
ID B9SEC1
description 40S ribosomal protein S18, putative OS=Ricinus communis GN=RCOM_0961900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08294: 214808-218463 , PASA_asmbl_08295: 215195-218440
cDNA
(Sanger)
(ID:Location)		 012_C02.ab1: 214929-218437 , 019_F13.ab1: 215813-218440 , 026_I16.ab1: 214975-218463 , 033_O24.ab1: 214952-218437 , 041_A12.ab1: 215843-218440 , 045_H05.ab1: 214960-218440 , 050_A06.ab1: 214967-218440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_180 0.0 - - 40S ribosomal protein S18, putative [Ricinus communis]
2 Hb_002768_030 0.0606831945 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_001780_040 0.0671522925 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
4 Hb_002518_080 0.0672490044 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
5 Hb_001504_110 0.0687765164 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
6 Hb_001832_060 0.0706595694 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
7 Hb_000025_620 0.0706870183 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
8 Hb_022425_040 0.0742397236 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
9 Hb_002686_020 0.0759404209 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
10 Hb_001540_010 0.0776584811 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
11 Hb_003683_110 0.0780866832 - - JHL10I11.3 [Jatropha curcas]
12 Hb_000012_220 0.0783275187 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012573_070 0.0786695574 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000510_110 0.07976664 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
15 Hb_015279_010 0.080023776 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000260_550 0.0801179584 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_010921_010 0.081193391 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
18 Hb_001979_040 0.0817443039 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
19 Hb_007416_030 0.0821368612 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
20 Hb_002235_350 0.0823708057 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_180 Hb_000127_180 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001504_110 Hb_001504_110 Hb_000127_180--Hb_001504_110 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_003683_110 Hb_003683_110 Hb_002768_030--Hb_003683_110 Hb_002768_030--Hb_001780_040 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_001780_040--Hb_000025_620 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_022425_040 Hb_022425_040 Hb_002518_080--Hb_022425_040 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_015279_010 Hb_015279_010 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_002518_080--Hb_001504_110 Hb_000656_240 Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_001504_110--Hb_000025_620 Hb_004116_190 Hb_004116_190 Hb_001504_110--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_001504_110--Hb_000020_060 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_000025_620--Hb_003226_100 Hb_003018_010 Hb_003018_010 Hb_000025_620--Hb_003018_010 Hb_002056_050 Hb_002056_050 Hb_000025_620--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
141.812 62.7675 96.3177 59.9835 95.8845 100.442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.401 318.036 107.306 72.4491 57.2874

CAGE analysis