Hb_003018_010

Information

Type -
Description -
Location Contig3018: 3981-8456
Sequence    

Annotation

kegg
ID rcu:RCOM_0292340
description 6,7-dimethyl-8-ribityllumazine synthase, putative (EC:2.5.1.9)
nr
ID XP_012065550.1
description PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
swissprot
ID O80575
description 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1
trembl
ID A0A067LQA6
description 6,7-dimethyl-8-ribityllumazine synthase OS=Jatropha curcas GN=JCGZ_06502 PE=3 SV=1
Gene Ontology
ID GO:0009349
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31749: 3959-8409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_010 0.0 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
2 Hb_003226_100 0.0636202236 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
3 Hb_000025_620 0.0696756137 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
4 Hb_000836_470 0.0697813887 - - -
5 Hb_002226_060 0.0720499296 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
6 Hb_000656_240 0.0731554434 - - proteasome subunit alpha type, putative [Ricinus communis]
7 Hb_000996_140 0.0734223739 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
8 Hb_000329_200 0.073478879 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
9 Hb_001195_480 0.0751992603 - - cop9 complex subunit, putative [Ricinus communis]
10 Hb_001504_110 0.0765515592 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
11 Hb_001484_070 0.0772552675 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002056_050 0.0785615184 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
13 Hb_000920_110 0.0786859582 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
14 Hb_003683_110 0.0793166995 - - JHL10I11.3 [Jatropha curcas]
15 Hb_026053_020 0.0797628875 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
16 Hb_011512_070 0.0797773344 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
17 Hb_000529_030 0.0798479483 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003018_020 0.0800503257 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
19 Hb_006925_040 0.0810212044 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
20 Hb_001141_140 0.0814109718 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003018_010 Hb_003018_010 Hb_003226_100 Hb_003226_100 Hb_003018_010--Hb_003226_100 Hb_000025_620 Hb_000025_620 Hb_003018_010--Hb_000025_620 Hb_000836_470 Hb_000836_470 Hb_003018_010--Hb_000836_470 Hb_002226_060 Hb_002226_060 Hb_003018_010--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_003018_010--Hb_000656_240 Hb_000996_140 Hb_000996_140 Hb_003018_010--Hb_000996_140 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_001504_110 Hb_001504_110 Hb_000025_620--Hb_001504_110 Hb_000025_620--Hb_003226_100 Hb_001780_040 Hb_001780_040 Hb_000025_620--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_000025_620--Hb_000127_180 Hb_000025_620--Hb_002056_050 Hb_001728_030 Hb_001728_030 Hb_000836_470--Hb_001728_030 Hb_002811_170 Hb_002811_170 Hb_000836_470--Hb_002811_170 Hb_000836_470--Hb_003018_020 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_000836_470--Hb_002056_050 Hb_011512_070 Hb_011512_070 Hb_002226_060--Hb_011512_070 Hb_002226_060--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_002226_060--Hb_001341_150 Hb_000529_030 Hb_000529_030 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4562 13.1218 44.8437 26.6391 30.9556 31.752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5284 88.6099 35.7623 24.9971 22.3497

CAGE analysis