Hb_000025_620

Information

Type -
Description -
Location Contig25: 573824-576396
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05200g
description POPTRDRAFT_557911; hypothetical protein
nr
ID XP_002313375.1
description hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
swissprot
ID Q9M1J1
description Mitochondrial fission 1 protein A OS=Arabidopsis thaliana GN=FIS1A PE=1 SV=1
trembl
ID A9PC81
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05200g PE=2 SV=1
Gene Ontology
ID GO:0005515
description mitochondrial fission 1 protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26151: 573680-576415
cDNA
(Sanger)
(ID:Location)		 011_H18.ab1: 573868-576415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_620 0.0 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
2 Hb_001504_110 0.0546022936 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
3 Hb_003226_100 0.063695943 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
4 Hb_001780_040 0.0655524 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
5 Hb_003018_010 0.0696756137 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
6 Hb_000127_180 0.0706870183 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_002056_050 0.0732978828 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
8 Hb_011512_070 0.0791930337 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_002768_030 0.0824133435 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_000920_110 0.0826823278 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
11 Hb_000656_240 0.0834975712 - - proteasome subunit alpha type, putative [Ricinus communis]
12 Hb_003683_110 0.0839594343 - - JHL10I11.3 [Jatropha curcas]
13 Hb_001979_040 0.085034792 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
14 Hb_000217_030 0.0856515069 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
15 Hb_003053_010 0.0856749264 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
16 Hb_000529_030 0.0893054951 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_010068_020 0.0899786032 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
18 Hb_001221_210 0.0902063139 - - thiF family protein [Populus trichocarpa]
19 Hb_000506_070 0.0915422944 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
20 Hb_001141_140 0.0919895836 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000025_620 Hb_000025_620 Hb_001504_110 Hb_001504_110 Hb_000025_620--Hb_001504_110 Hb_003226_100 Hb_003226_100 Hb_000025_620--Hb_003226_100 Hb_001780_040 Hb_001780_040 Hb_000025_620--Hb_001780_040 Hb_003018_010 Hb_003018_010 Hb_000025_620--Hb_003018_010 Hb_000127_180 Hb_000127_180 Hb_000025_620--Hb_000127_180 Hb_002056_050 Hb_002056_050 Hb_000025_620--Hb_002056_050 Hb_000656_240 Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_001504_110--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_001504_110--Hb_000020_060 Hb_001504_110--Hb_000127_180 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100 Hb_003018_010--Hb_003226_100 Hb_000836_470 Hb_000836_470 Hb_003018_010--Hb_000836_470 Hb_002226_060 Hb_002226_060 Hb_003018_010--Hb_002226_060 Hb_003018_010--Hb_000656_240 Hb_000996_140 Hb_000996_140 Hb_003018_010--Hb_000996_140 Hb_000127_180--Hb_002768_030 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5342 21.5423 47.2184 23.2613 34.798 38.2384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.748 122.091 39.6447 41.4371 27.4871

CAGE analysis