Hb_002768_030

Information

Type -
Description -
Location Contig2768: 23363-25009
Sequence    

Annotation

kegg
ID rcu:RCOM_1302610
description gaba(A) receptor-associated protein, putative
nr
ID XP_002529905.1
description gaba(A) receptor-associated protein, putative [Ricinus communis]
swissprot
ID Q6Z1D5
description Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1
trembl
ID B9SV86
description Autophagy-related protein OS=Ricinus communis GN=RCOM_1302610 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28928: 23504-26421 , PASA_asmbl_28929: 23986-24626 , PASA_asmbl_28930: 23735-26430
cDNA
(Sanger)
(ID:Location)		 001_M07.ab1: 23529-26357 , 010_P07.ab1: 23902-26393 , 030_A11.ab1: 23535-26352 , 032_P23.ab1: 23772-26430 , 034_L12.ab1: 23735-26430 , 036_F10.ab1: 23529-26357 , 041_H17.ab1: 23906-26439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_030 0.0 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
2 Hb_003683_110 0.0557134811 - - JHL10I11.3 [Jatropha curcas]
3 Hb_001780_040 0.0568812632 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
4 Hb_000127_180 0.0606831945 - - 40S ribosomal protein S18, putative [Ricinus communis]
5 Hb_000996_140 0.0691427308 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
6 Hb_000035_370 0.0763701135 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006831_130 0.0775444576 - - catalytic, putative [Ricinus communis]
8 Hb_006925_040 0.0788750502 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
9 Hb_001141_140 0.0802658979 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
10 Hb_002235_350 0.0806656809 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
11 Hb_004453_170 0.0814252369 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
12 Hb_000510_110 0.0816060215 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
13 Hb_000025_620 0.0824133435 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
14 Hb_001504_110 0.0833426155 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
15 Hb_001832_060 0.0838156343 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
16 Hb_007416_030 0.0840349437 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
17 Hb_000906_040 0.0850097528 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
18 Hb_003018_010 0.0853984448 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
19 Hb_001047_230 0.0858685895 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_000029_200 0.0861512038 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]

Gene co-expression network

sample Hb_002768_030 Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001504_110 Hb_001504_110 Hb_000127_180--Hb_001504_110 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_000127_180--Hb_000025_620 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000920_110 Hb_000920_110 Hb_000035_370--Hb_000920_110 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_000035_370--Hb_006831_130 Hb_000035_370--Hb_026053_020 Hb_006831_130--Hb_010175_040 Hb_004453_170 Hb_004453_170 Hb_006831_130--Hb_004453_170 Hb_006831_130--Hb_000996_140 Hb_006831_130--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.8107 22.9901 49.4454 26.7664 32.2742 39.4772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.1548 135.591 50.0001 20.7193 26.4228

CAGE analysis