Hb_001377_150

Information

Type -
Description -
Location Contig1377: 130899-140118
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17130g
description POPTRDRAFT_816633; autophagy protein Apg6
nr
ID KDP28495.1
description hypothetical protein JCGZ_14266 [Jatropha curcas]
swissprot
ID Q9M367
description Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2
trembl
ID A0A067K881
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14266 PE=4 SV=1
Gene Ontology
ID GO:0006914
description beclin-1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10391: 131077-131802 , PASA_asmbl_10392: 132835-138766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_150 0.0 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
2 Hb_002893_060 0.0782705547 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
3 Hb_004297_070 0.0814819138 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
4 Hb_003018_120 0.0832966492 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_000573_070 0.0841722059 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
6 Hb_002518_050 0.0847334313 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_000933_180 0.088497102 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
8 Hb_000494_020 0.0888711185 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
9 Hb_010407_040 0.0905032203 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
10 Hb_001540_010 0.0922449882 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
11 Hb_000815_040 0.0932317438 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
12 Hb_181288_010 0.0933855508 - - rac-GTP binding protein, putative [Ricinus communis]
13 Hb_012573_070 0.0987464463 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004204_120 0.0997396677 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
15 Hb_004934_110 0.101696387 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
16 Hb_011381_060 0.1021876575 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
17 Hb_000465_060 0.1034226655 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
18 Hb_023732_070 0.1044184183 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
19 Hb_128048_010 0.1059429081 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_000163_160 0.1061279172 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]

Gene co-expression network

sample Hb_001377_150 Hb_001377_150 Hb_002893_060 Hb_002893_060 Hb_001377_150--Hb_002893_060 Hb_004297_070 Hb_004297_070 Hb_001377_150--Hb_004297_070 Hb_003018_120 Hb_003018_120 Hb_001377_150--Hb_003018_120 Hb_000573_070 Hb_000573_070 Hb_001377_150--Hb_000573_070 Hb_002518_050 Hb_002518_050 Hb_001377_150--Hb_002518_050 Hb_000933_180 Hb_000933_180 Hb_001377_150--Hb_000933_180 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_003001_060 Hb_003001_060 Hb_002893_060--Hb_003001_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_003878_190 Hb_003878_190 Hb_002893_060--Hb_003878_190 Hb_001824_070 Hb_001824_070 Hb_002893_060--Hb_001824_070 Hb_001278_110 Hb_001278_110 Hb_004297_070--Hb_001278_110 Hb_181288_010 Hb_181288_010 Hb_004297_070--Hb_181288_010 Hb_003266_050 Hb_003266_050 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_000798_030 Hb_000798_030 Hb_003018_120--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_004204_070 Hb_004204_070 Hb_000573_070--Hb_004204_070 Hb_010449_020 Hb_010449_020 Hb_000573_070--Hb_010449_020 Hb_010661_030 Hb_010661_030 Hb_000573_070--Hb_010661_030 Hb_002272_250 Hb_002272_250 Hb_000573_070--Hb_002272_250 Hb_000000_160 Hb_000000_160 Hb_000573_070--Hb_000000_160 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00126 1.28676 2.76803 1.83875 3.03665 5.12163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.38858 8.80726 2.77218 2.61836 1.47254

CAGE analysis