Hb_006925_040

Information

Type -
Description -
Location Contig6925: 90469-91704
Sequence    

Annotation

kegg
ID vvi:100246956
description 60S ribosomal protein L24
nr
ID XP_007010133.1
description 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
swissprot
ID Q9FUL4
description 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1
trembl
ID A0A061FPV3
description 60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54495: 90566-92252
cDNA
(Sanger)
(ID:Location)		 017_B16.ab1: 90655-92252

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_040 0.0 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
2 Hb_001141_140 0.0553142973 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
3 Hb_000046_560 0.0702000172 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
4 Hb_002783_270 0.0738542219 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
5 Hb_003053_010 0.0739429856 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
6 Hb_007044_130 0.0767194841 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
7 Hb_000996_140 0.0775484445 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
8 Hb_001484_070 0.0778225177 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002768_030 0.0788750502 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_000453_090 0.0805830481 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
11 Hb_003018_010 0.0810212044 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
12 Hb_000735_040 0.0830464807 - - 60S ribosomal protein L32A [Hevea brasiliensis]
13 Hb_002864_050 0.0852336043 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
14 Hb_003683_110 0.0852859825 - - JHL10I11.3 [Jatropha curcas]
15 Hb_026053_020 0.0855951868 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
16 Hb_000699_160 0.0873450038 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
17 Hb_001780_040 0.0887982528 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
18 Hb_003018_020 0.088993595 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
19 Hb_003226_100 0.089925367 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
20 Hb_005063_050 0.0904327331 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006925_040 Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_006925_040--Hb_001141_140 Hb_000046_560 Hb_000046_560 Hb_006925_040--Hb_000046_560 Hb_002783_270 Hb_002783_270 Hb_006925_040--Hb_002783_270 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_007044_130 Hb_007044_130 Hb_006925_040--Hb_007044_130 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001141_140--Hb_003226_100 Hb_001141_140--Hb_007044_130 Hb_003018_020 Hb_003018_020 Hb_001141_140--Hb_003018_020 Hb_000046_560--Hb_002783_270 Hb_003683_110 Hb_003683_110 Hb_000046_560--Hb_003683_110 Hb_000046_560--Hb_000996_140 Hb_000046_560--Hb_007044_130 Hb_004157_030 Hb_004157_030 Hb_000046_560--Hb_004157_030 Hb_002783_270--Hb_007044_130 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_000297_230 Hb_000297_230 Hb_003053_010--Hb_000297_230 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_007044_130--Hb_003894_070 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.4147 21.5065 104.329 65.7941 58.6878 73.8071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.364 271.647 105.754 45.9658 40.7084

CAGE analysis