Hb_003894_070

Information

Type -
Description -
Location Contig3894: 48828-52239
Sequence    

Annotation

kegg
ID rcu:RCOM_1612220
description proteasome subunit beta type, putative (EC:3.4.25.1)
nr
ID XP_012083566.1
description PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
swissprot
ID O82531
description Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
trembl
ID A0A067KAD1
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_14520 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39024: 48937-52175
cDNA
(Sanger)
(ID:Location)		 039_M11.ab1: 49239-52175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_070 0.0 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
2 Hb_007044_130 0.0756047912 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
3 Hb_002783_270 0.0772471607 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
4 Hb_014720_040 0.0864806614 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
5 Hb_001341_090 0.0895567668 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
6 Hb_005045_060 0.0911454298 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
7 Hb_000836_470 0.091502848 - - -
8 Hb_001016_150 0.096443334 - - Rop1 [Hevea brasiliensis]
9 Hb_001728_030 0.0968269673 - - 60S ribosomal protein L15 [Populus trichocarpa]
10 Hb_003992_270 0.0992225326 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
11 Hb_000527_060 0.1010810176 - - Protein C20orf11, putative [Ricinus communis]
12 Hb_001141_140 0.101388574 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
13 Hb_003226_100 0.1026572046 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_000260_550 0.103010606 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_000172_320 0.103258323 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
16 Hb_003018_020 0.1046917811 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
17 Hb_002900_160 0.1052431845 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
18 Hb_143496_010 0.1062183748 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
19 Hb_008921_020 0.1076854127 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
20 Hb_002078_140 0.1078566638 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003894_070 Hb_003894_070 Hb_007044_130 Hb_007044_130 Hb_003894_070--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_003894_070--Hb_002783_270 Hb_014720_040 Hb_014720_040 Hb_003894_070--Hb_014720_040 Hb_001341_090 Hb_001341_090 Hb_003894_070--Hb_001341_090 Hb_005045_060 Hb_005045_060 Hb_003894_070--Hb_005045_060 Hb_000836_470 Hb_000836_470 Hb_003894_070--Hb_000836_470 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_002783_270--Hb_006925_040 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_002783_270--Hb_001341_090 Hb_001016_150 Hb_001016_150 Hb_014720_040--Hb_001016_150 Hb_005667_040 Hb_005667_040 Hb_014720_040--Hb_005667_040 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090 Hb_004709_010 Hb_004709_010 Hb_014720_040--Hb_004709_010 Hb_001341_090--Hb_005045_060 Hb_134949_020 Hb_134949_020 Hb_001341_090--Hb_134949_020 Hb_000996_140 Hb_000996_140 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060 Hb_004032_010 Hb_004032_010 Hb_005045_060--Hb_004032_010 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_001489_060 Hb_001489_060 Hb_005045_060--Hb_001489_060 Hb_002811_260 Hb_002811_260 Hb_005045_060--Hb_002811_260 Hb_001728_030 Hb_001728_030 Hb_000836_470--Hb_001728_030 Hb_002811_170 Hb_002811_170 Hb_000836_470--Hb_002811_170 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5785 16.4163 42.9467 46.595 48.3526 32.2498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5401 124.171 35.8922 23.5722 18.0478

CAGE analysis