Hb_014720_040

Information

Type -
Description -
Location Contig14720: 89704-90285
Sequence    

Annotation

kegg
ID rcu:RCOM_1510530
description 50S ribosomal protein L7/L12, putative
nr
ID XP_012080061.1
description PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
swissprot
ID Q9L5W4
description 50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1
trembl
ID A0A067KFQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11471 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11953: 88699-90461 , PASA_asmbl_11954: 88364-90460
cDNA
(Sanger)
(ID:Location)		 041_I21.ab1: 88361-90145

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_040 0.0 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
2 Hb_001016_150 0.0846892756 - - Rop1 [Hevea brasiliensis]
3 Hb_005667_040 0.0851788901 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
4 Hb_003894_070 0.0864806614 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
5 Hb_000836_470 0.0867226153 - - -
6 Hb_000005_090 0.0870550517 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
7 Hb_004709_010 0.0884107446 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
8 Hb_002171_060 0.0884700444 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003494_050 0.0926650209 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
10 Hb_000046_560 0.0935410375 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
11 Hb_000506_070 0.0952029998 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
12 Hb_001728_030 0.0952861274 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_002783_270 0.0974493467 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
14 Hb_001863_430 0.097911761 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
15 Hb_002811_170 0.0984290269 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_007044_130 0.0986800289 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
17 Hb_000261_160 0.1005599767 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
18 Hb_003018_020 0.1006988139 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
19 Hb_001341_090 0.101220499 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
20 Hb_009476_020 0.1033590823 - - tryptophan biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_014720_040 Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_014720_040--Hb_001016_150 Hb_005667_040 Hb_005667_040 Hb_014720_040--Hb_005667_040 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090 Hb_004709_010 Hb_004709_010 Hb_014720_040--Hb_004709_010 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001863_430 Hb_001863_430 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_005667_040--Hb_004709_010 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_007044_130 Hb_007044_130 Hb_003894_070--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_003894_070--Hb_002783_270 Hb_001341_090 Hb_001341_090 Hb_003894_070--Hb_001341_090 Hb_005045_060 Hb_005045_060 Hb_003894_070--Hb_005045_060 Hb_003894_070--Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_000836_470--Hb_001728_030 Hb_000836_470--Hb_002811_170 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370 Hb_004709_010--Hb_002686_110 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_087749_010 Hb_087749_010 Hb_004709_010--Hb_087749_010 Hb_000676_140 Hb_000676_140 Hb_004709_010--Hb_000676_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1246 9.51545 23.8032 29.6014 18.4081 23.711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1629 72.9264 14.0261 14.4356 16.3134

CAGE analysis