Hb_002686_110

Information

Type -
Description -
Location Contig2686: 55670-56327
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27999: 54678-55506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_110 0.0 - - -
2 Hb_004709_010 0.0569056135 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
3 Hb_005667_040 0.0730519159 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
4 Hb_000160_060 0.1011080638 - - unknown [Populus trichocarpa]
5 Hb_087749_010 0.1021929937 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
6 Hb_005000_330 0.1063539064 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000768_210 0.1074000316 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
8 Hb_000111_380 0.1087185174 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
9 Hb_014720_040 0.1093959025 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
10 Hb_006573_020 0.1097468036 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
11 Hb_000808_190 0.1145073449 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
12 Hb_004784_020 0.1153452426 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
13 Hb_002601_110 0.1163869962 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
14 Hb_000002_380 0.1191798505 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
15 Hb_001728_030 0.1195143894 - - 60S ribosomal protein L15 [Populus trichocarpa]
16 Hb_002171_060 0.1198193212 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002411_040 0.1198465516 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
18 Hb_006693_020 0.1200369086 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
19 Hb_000836_470 0.1201397906 - - -
20 Hb_022318_010 0.1213734007 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002686_110 Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_002686_110--Hb_004709_010 Hb_005667_040 Hb_005667_040 Hb_002686_110--Hb_005667_040 Hb_000160_060 Hb_000160_060 Hb_002686_110--Hb_000160_060 Hb_087749_010 Hb_087749_010 Hb_002686_110--Hb_087749_010 Hb_005000_330 Hb_005000_330 Hb_002686_110--Hb_005000_330 Hb_000768_210 Hb_000768_210 Hb_002686_110--Hb_000768_210 Hb_004709_010--Hb_005667_040 Hb_014720_040 Hb_014720_040 Hb_004709_010--Hb_014720_040 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_004709_010--Hb_087749_010 Hb_000676_140 Hb_000676_140 Hb_004709_010--Hb_000676_140 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_005054_060 Hb_005054_060 Hb_000160_060--Hb_005054_060 Hb_009694_010 Hb_009694_010 Hb_000160_060--Hb_009694_010 Hb_005731_050 Hb_005731_050 Hb_000160_060--Hb_005731_050 Hb_000111_380 Hb_000111_380 Hb_000160_060--Hb_000111_380 Hb_000562_030 Hb_000562_030 Hb_000160_060--Hb_000562_030 Hb_000329_200 Hb_000329_200 Hb_000160_060--Hb_000329_200 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_002613_020 Hb_002613_020 Hb_087749_010--Hb_002613_020 Hb_002798_020 Hb_002798_020 Hb_087749_010--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_002518_210 Hb_002518_210 Hb_000768_210--Hb_002518_210 Hb_001366_370 Hb_001366_370 Hb_000768_210--Hb_001366_370 Hb_002053_140 Hb_002053_140 Hb_000768_210--Hb_002053_140 Hb_001232_190 Hb_001232_190 Hb_000768_210--Hb_001232_190 Hb_024650_070 Hb_024650_070 Hb_000768_210--Hb_024650_070 Hb_086085_020 Hb_086085_020 Hb_000768_210--Hb_086085_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26085 0.646848 2.45271 4.09495 2.40816 3.20726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8988 5.89619 1.40298 1.81794 1.91295

CAGE analysis