Hb_000111_380

Information

Type -
Description -
Location Contig111: 374325-376993
Sequence    

Annotation

kegg
ID tcc:TCM_014470
description Uncharacterized protein isoform 1
nr
ID XP_012068715.1
description PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
swissprot
ID Q9VKV8
description Cilia- and flagella-associated protein 20 OS=Drosophila melanogaster GN=CFAP20 PE=1 SV=1
trembl
ID A0A067KZY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24562 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03414: 374362-376948 , PASA_asmbl_03416: 375864-376430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_380 0.0 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
2 Hb_005731_050 0.0767096647 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
3 Hb_004108_070 0.0830175972 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
4 Hb_002601_110 0.0865534273 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
5 Hb_000656_170 0.0881128261 - - lsm1, putative [Ricinus communis]
6 Hb_001140_370 0.0895688289 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
7 Hb_033594_120 0.0913313311 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
8 Hb_003038_210 0.0914179271 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
9 Hb_024071_020 0.0926568329 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_002271_020 0.0928520875 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
11 Hb_006059_050 0.0944699461 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_000160_060 0.0945374487 - - unknown [Populus trichocarpa]
13 Hb_000960_060 0.0946253098 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
14 Hb_001579_270 0.0967272023 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
15 Hb_000792_130 0.0968294584 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
16 Hb_005667_040 0.0974083409 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
17 Hb_007878_010 0.0977914135 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
18 Hb_062226_140 0.0977949713 - - PREDICTED: protein NEDD1 [Jatropha curcas]
19 Hb_000342_100 0.0978287455 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
20 Hb_003435_020 0.0982807583 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_380 Hb_000111_380 Hb_005731_050 Hb_005731_050 Hb_000111_380--Hb_005731_050 Hb_004108_070 Hb_004108_070 Hb_000111_380--Hb_004108_070 Hb_002601_110 Hb_002601_110 Hb_000111_380--Hb_002601_110 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_001140_370 Hb_001140_370 Hb_000111_380--Hb_001140_370 Hb_033594_120 Hb_033594_120 Hb_000111_380--Hb_033594_120 Hb_000960_060 Hb_000960_060 Hb_005731_050--Hb_000960_060 Hb_005731_050--Hb_004108_070 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_005731_050--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_005731_050--Hb_003428_030 Hb_006693_020 Hb_006693_020 Hb_004108_070--Hb_006693_020 Hb_000317_390 Hb_000317_390 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_033594_120--Hb_000960_060 Hb_002473_130 Hb_002473_130 Hb_033594_120--Hb_002473_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.579 18.911 26.9789 32.8615 26.8602 45.7428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.3917 58.6627 22.252 20.2406 19.7544

CAGE analysis