Hb_002375_070

Information

Type -
Description -
Location Contig2375: 107700-108464
Sequence    

Annotation

kegg
ID rcu:RCOM_0548540
description hypothetical protein
nr
ID XP_002530588.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5R8X3
description Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1
trembl
ID B9SX69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0548540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24951: 107706-108622
cDNA
(Sanger)
(ID:Location)		 009_L05.ab1: 107708-108569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004108_070 0.0714726441 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
3 Hb_003671_020 0.0720262714 - - calcineurin B, putative [Ricinus communis]
4 Hb_011344_210 0.0743504048 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
5 Hb_000692_220 0.0780501822 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_000331_200 0.0803900129 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
7 Hb_092337_010 0.0805225425 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
8 Hb_000815_320 0.0828298039 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
9 Hb_029866_090 0.0831485686 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
10 Hb_002863_050 0.0844905097 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_001009_270 0.0845178571 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
12 Hb_004032_010 0.0856564526 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
13 Hb_075449_010 0.0858143207 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
14 Hb_003502_090 0.0861397007 - - ATP synthase subunit d, putative [Ricinus communis]
15 Hb_007009_010 0.0865373714 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
16 Hb_003605_090 0.0871976195 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
17 Hb_003108_020 0.0875112623 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
18 Hb_000417_040 0.0883057043 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_024439_010 0.0885470658 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_009615_070 0.0885491944 - - type X protein phosphatase-II [Populus trichocarpa]

Gene co-expression network

sample Hb_002375_070 Hb_002375_070 Hb_004108_070 Hb_004108_070 Hb_002375_070--Hb_004108_070 Hb_003671_020 Hb_003671_020 Hb_002375_070--Hb_003671_020 Hb_011344_210 Hb_011344_210 Hb_002375_070--Hb_011344_210 Hb_000692_220 Hb_000692_220 Hb_002375_070--Hb_000692_220 Hb_000331_200 Hb_000331_200 Hb_002375_070--Hb_000331_200 Hb_092337_010 Hb_092337_010 Hb_002375_070--Hb_092337_010 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_006693_020 Hb_006693_020 Hb_004108_070--Hb_006693_020 Hb_000317_390 Hb_000317_390 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_000125_100 Hb_000125_100 Hb_003671_020--Hb_000125_100 Hb_003414_050 Hb_003414_050 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_009615_070 Hb_009615_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_000580_180 Hb_000580_180 Hb_011344_210--Hb_000580_180 Hb_001009_270 Hb_001009_270 Hb_011344_210--Hb_001009_270 Hb_032208_090 Hb_032208_090 Hb_011344_210--Hb_032208_090 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_003126_050 Hb_003126_050 Hb_011344_210--Hb_003126_050 Hb_001205_150 Hb_001205_150 Hb_000692_220--Hb_001205_150 Hb_000692_220--Hb_000479_190 Hb_010174_020 Hb_010174_020 Hb_000692_220--Hb_010174_020 Hb_000692_220--Hb_092337_010 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_001703_060 Hb_001703_060 Hb_000331_200--Hb_001703_060 Hb_000331_200--Hb_000317_390 Hb_000331_200--Hb_006693_020 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_092337_010--Hb_000125_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.37 32.5849 37.7426 72.3164 51.4924 62.1988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4623 100.018 81.7644 25.3785 30.3171

CAGE analysis