Hb_000125_100

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 129934-140300
Sequence    

Annotation

kegg
ID gmx:102666855
description uncharacterized LOC102666855
nr
ID XP_012073451.1
description PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID K7MBH8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07600: 130221-131209 , PASA_asmbl_07602: 140280-166363 , PASA_asmbl_07605: 139543-139947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_100 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
2 Hb_003671_020 0.0568488769 - - calcineurin B, putative [Ricinus communis]
3 Hb_092337_010 0.0787870882 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
4 Hb_003414_050 0.0796698169 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
5 Hb_001205_150 0.0879006836 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
6 Hb_009615_070 0.0881226115 - - type X protein phosphatase-II [Populus trichocarpa]
7 Hb_000629_120 0.0883458196 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
8 Hb_001936_010 0.0889184214 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
9 Hb_002301_060 0.0951412557 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
10 Hb_040575_010 0.0989671838 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
11 Hb_002375_070 0.0997153717 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007009_010 0.1003890075 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
13 Hb_006429_010 0.1014749454 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
14 Hb_000692_220 0.1016895994 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
15 Hb_000479_190 0.1025605556 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010174_020 0.1071914727 - - protein binding protein, putative [Ricinus communis]
17 Hb_000161_060 0.1081585349 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
18 Hb_005686_060 0.1084723439 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
19 Hb_002620_020 0.1085693927 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
20 Hb_004705_100 0.1086303655 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]

Gene co-expression network

sample Hb_000125_100 Hb_000125_100 Hb_003671_020 Hb_003671_020 Hb_000125_100--Hb_003671_020 Hb_092337_010 Hb_092337_010 Hb_000125_100--Hb_092337_010 Hb_003414_050 Hb_003414_050 Hb_000125_100--Hb_003414_050 Hb_001205_150 Hb_001205_150 Hb_000125_100--Hb_001205_150 Hb_009615_070 Hb_009615_070 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_000692_220 Hb_000692_220 Hb_092337_010--Hb_000692_220 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_001205_150--Hb_000692_220 Hb_010174_020 Hb_010174_020 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_000629_120--Hb_000161_060 Hb_000138_110 Hb_000138_110 Hb_000629_120--Hb_000138_110 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_000629_120--Hb_001205_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12733 2.90531 1.79408 5.61895 2.17452 5.55001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72505 7.22834 7.25557 2.22047 1.97537

CAGE analysis