Hb_001936_010

Information

Type -
Description -
Location Contig1936: 2425-6756
Sequence    

Annotation

kegg
ID cic:CICLE_v10017502mg
description hypothetical protein
nr
ID KGN62290.1
description hypothetical protein Csa_2G348280 [Cucumis sativus]
swissprot
ID P51823
description ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2
trembl
ID A0A0A0LK50
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348280 PE=3 SV=1
Gene Ontology
ID GO:0005829
description adp-ribosylation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19325: 2312-6322
cDNA
(Sanger)
(ID:Location)		 004_I01.ab1: 2482-6310 , 005_I01.ab1: 2513-6310 , 041_E02.ab1: 2592-6310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_010 0.0 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
2 Hb_001159_130 0.0660945552 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
3 Hb_092337_010 0.0762800183 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
4 Hb_094836_010 0.0769400673 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
5 Hb_000116_270 0.0849470323 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
6 Hb_001799_210 0.0856742037 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
7 Hb_002620_020 0.0873831923 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
8 Hb_001377_490 0.0884027105 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
9 Hb_000345_310 0.0884652952 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
10 Hb_000125_100 0.0889184214 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
11 Hb_187679_010 0.0899173473 - - -
12 Hb_000003_250 0.0903188517 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_004078_040 0.0903415887 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
14 Hb_001014_030 0.0904669704 - - ATP binding protein, putative [Ricinus communis]
15 Hb_007101_300 0.0907564103 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
16 Hb_003502_090 0.0918669189 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_119600_070 0.09195326 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
18 Hb_001300_150 0.0926771439 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_000477_060 0.0935061945 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_009615_070 0.0941712925 - - type X protein phosphatase-II [Populus trichocarpa]

Gene co-expression network

sample Hb_001936_010 Hb_001936_010 Hb_001159_130 Hb_001159_130 Hb_001936_010--Hb_001159_130 Hb_092337_010 Hb_092337_010 Hb_001936_010--Hb_092337_010 Hb_094836_010 Hb_094836_010 Hb_001936_010--Hb_094836_010 Hb_000116_270 Hb_000116_270 Hb_001936_010--Hb_000116_270 Hb_001799_210 Hb_001799_210 Hb_001936_010--Hb_001799_210 Hb_002620_020 Hb_002620_020 Hb_001936_010--Hb_002620_020 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_000692_220 Hb_000692_220 Hb_092337_010--Hb_000692_220 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_000125_100 Hb_000125_100 Hb_092337_010--Hb_000125_100 Hb_094836_010--Hb_002620_020 Hb_004078_040 Hb_004078_040 Hb_094836_010--Hb_004078_040 Hb_000614_250 Hb_000614_250 Hb_094836_010--Hb_000614_250 Hb_001377_490 Hb_001377_490 Hb_094836_010--Hb_001377_490 Hb_004837_160 Hb_004837_160 Hb_094836_010--Hb_004837_160 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_000465_160 Hb_000465_160 Hb_001799_210--Hb_000465_160 Hb_001009_270 Hb_001009_270 Hb_001799_210--Hb_001009_270 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210 Hb_000066_080 Hb_000066_080 Hb_002620_020--Hb_000066_080 Hb_002620_020--Hb_000003_250 Hb_002450_020 Hb_002450_020 Hb_002620_020--Hb_002450_020 Hb_002620_020--Hb_001377_490 Hb_002620_020--Hb_000614_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1375 36.2695 37.8206 80.682 31.1337 62.5218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.3388 64.1548 88.5008 35.5038 30.5713

CAGE analysis