Hb_002620_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2620: 89212-90039
Sequence    

Annotation

kegg
ID rcu:RCOM_0159210
description DNA binding protein, putative
nr
ID XP_002534148.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7C9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0159210 PE=4 SV=1
Gene Ontology
ID GO:0003700
description basic-leucine zipper transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27409: 89439-90485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002620_020 0.0 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
2 Hb_000066_080 0.0542785413 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_094836_010 0.0650819395 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
4 Hb_000003_250 0.0692468667 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_002450_020 0.0703802229 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_001377_490 0.0707388816 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
7 Hb_000614_250 0.071669869 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
8 Hb_003697_040 0.0729058951 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
9 Hb_001014_030 0.0730654049 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000477_060 0.0778327898 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
11 Hb_004078_040 0.0779256126 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
12 Hb_164010_030 0.0780022599 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_002046_180 0.0783902743 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
14 Hb_000116_260 0.0787640839 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
15 Hb_004837_160 0.0790976734 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
16 Hb_000856_010 0.0794662705 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
17 Hb_004934_100 0.0827975074 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000783_020 0.0831647463 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
19 Hb_009615_070 0.0845437454 - - type X protein phosphatase-II [Populus trichocarpa]
20 Hb_009803_050 0.0858478447 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]

Gene co-expression network

sample Hb_002620_020 Hb_002620_020 Hb_000066_080 Hb_000066_080 Hb_002620_020--Hb_000066_080 Hb_094836_010 Hb_094836_010 Hb_002620_020--Hb_094836_010 Hb_000003_250 Hb_000003_250 Hb_002620_020--Hb_000003_250 Hb_002450_020 Hb_002450_020 Hb_002620_020--Hb_002450_020 Hb_001377_490 Hb_001377_490 Hb_002620_020--Hb_001377_490 Hb_000614_250 Hb_000614_250 Hb_002620_020--Hb_000614_250 Hb_119600_070 Hb_119600_070 Hb_000066_080--Hb_119600_070 Hb_000066_080--Hb_000003_250 Hb_000783_020 Hb_000783_020 Hb_000066_080--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_000066_080--Hb_003697_040 Hb_000749_220 Hb_000749_220 Hb_000066_080--Hb_000749_220 Hb_001936_010 Hb_001936_010 Hb_094836_010--Hb_001936_010 Hb_004078_040 Hb_004078_040 Hb_094836_010--Hb_004078_040 Hb_094836_010--Hb_000614_250 Hb_094836_010--Hb_001377_490 Hb_004837_160 Hb_004837_160 Hb_094836_010--Hb_004837_160 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000041_100 Hb_000041_100 Hb_002450_020--Hb_000041_100 Hb_011386_010 Hb_011386_010 Hb_002450_020--Hb_011386_010 Hb_000297_010 Hb_000297_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_015934_040 Hb_015934_040 Hb_002450_020--Hb_015934_040 Hb_002450_020--Hb_001014_030 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_000009_560 Hb_000009_560 Hb_001377_490--Hb_000009_560 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_001377_490--Hb_000003_250 Hb_000840_250 Hb_000840_250 Hb_000614_250--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_000614_250--Hb_001633_210 Hb_000614_250--Hb_001014_030 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6179 42.2065 29.6988 57.5207 33.3979 55.4062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7205 74.5462 83.2733 34.1775 49.6394

CAGE analysis