Hb_002601_110

Information

Type -
Description -
Location Contig2601: 97850-101001
Sequence    

Annotation

kegg
ID rcu:RCOM_0897270
description histone h2a, putative
nr
ID XP_012073265.1
description PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
swissprot
ID Q9C944
description Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1
trembl
ID A0A067KLN0
description Histone H2A OS=Jatropha curcas GN=JCGZ_06207 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone h2a variant 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27111: 97865-100976 , PASA_asmbl_27112: 98265-98534 , PASA_asmbl_27113: 98770-99070
cDNA
(Sanger)
(ID:Location)		 029_P01.ab1: 97867-100907

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002601_110 0.0 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
2 Hb_002820_050 0.0791586572 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
3 Hb_002245_030 0.0809601932 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_006059_050 0.0831653991 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
5 Hb_000111_380 0.0865534273 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
6 Hb_004108_070 0.0871036311 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
7 Hb_001124_090 0.0878373593 - - acyl carrier protein, putative [Ricinus communis]
8 Hb_000529_030 0.0888297688 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001140_370 0.0894785948 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_005731_050 0.0895826155 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
11 Hb_001195_480 0.0901422208 - - cop9 complex subunit, putative [Ricinus communis]
12 Hb_005730_120 0.0924402716 - - PREDICTED: protein WHI4 [Jatropha curcas]
13 Hb_014720_120 0.0929640594 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
14 Hb_007878_010 0.0936198305 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
15 Hb_004453_130 0.0938130864 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
16 Hb_000457_180 0.0942612139 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
17 Hb_002411_040 0.0942973371 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
18 Hb_001157_020 0.0958226414 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
19 Hb_001318_250 0.0969047225 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
20 Hb_003544_020 0.0973535026 - - PREDICTED: elongin-A [Jatropha curcas]

Gene co-expression network

sample Hb_002601_110 Hb_002601_110 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_004108_070 Hb_004108_070 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_004453_130 Hb_004453_130 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002876_240 Hb_002876_240 Hb_002820_050--Hb_002876_240 Hb_014720_120 Hb_014720_120 Hb_002245_030--Hb_014720_120 Hb_000220_010 Hb_000220_010 Hb_002245_030--Hb_000220_010 Hb_000796_210 Hb_000796_210 Hb_002245_030--Hb_000796_210 Hb_002245_030--Hb_005730_120 Hb_007423_040 Hb_007423_040 Hb_002245_030--Hb_007423_040 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_172426_040 Hb_172426_040 Hb_006059_050--Hb_172426_040 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_005731_050 Hb_005731_050 Hb_000111_380--Hb_005731_050 Hb_000111_380--Hb_004108_070 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_001140_370 Hb_001140_370 Hb_000111_380--Hb_001140_370 Hb_033594_120 Hb_033594_120 Hb_000111_380--Hb_033594_120 Hb_004108_070--Hb_005731_050 Hb_006693_020 Hb_006693_020 Hb_004108_070--Hb_006693_020 Hb_000317_390 Hb_000317_390 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_001318_250 Hb_001318_250 Hb_001124_090--Hb_001318_250 Hb_000982_090 Hb_000982_090 Hb_001124_090--Hb_000982_090 Hb_000934_250 Hb_000934_250 Hb_001124_090--Hb_000934_250 Hb_001124_090--Hb_006059_050 Hb_001124_090--Hb_000317_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1029 13.4783 30.0616 32.0473 24.6888 26.0373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6902 41.9905 17.1506 14.0271 15.4705

CAGE analysis