Hb_002876_240

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex
Location Contig2876: 220022-223599
Sequence    

Annotation

kegg
ID mdm:103443887
description dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
nr
ID XP_012070374.1
description PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9C8P0
description Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana GN=EMB3003 PE=2 SV=1
trembl
ID A0A067LI89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03921 PE=3 SV=1
Gene Ontology
ID GO:0009507
description dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30052: 220426-220872 , PASA_asmbl_30053: 221311-223487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_240 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
2 Hb_000094_330 0.0601554807 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
3 Hb_002820_110 0.0731731695 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
4 Hb_002820_050 0.0794443507 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
5 Hb_004453_130 0.0850677112 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
6 Hb_146673_010 0.085456078 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
7 Hb_000529_030 0.0910178525 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_003848_040 0.1011032045 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
9 Hb_000731_160 0.1016322919 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
10 Hb_003942_020 0.1020007013 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_002477_300 0.1024964366 - - transcription factor, putative [Ricinus communis]
12 Hb_001221_320 0.1055385136 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
13 Hb_000510_330 0.1061238604 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
14 Hb_008686_080 0.1064905564 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
15 Hb_001195_480 0.1067329306 - - cop9 complex subunit, putative [Ricinus communis]
16 Hb_000236_390 0.1075656878 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
17 Hb_000633_020 0.1086378995 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
18 Hb_007885_060 0.108939203 - - replication factor C 40 kDa family protein [Populus trichocarpa]
19 Hb_002601_110 0.1092421508 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
20 Hb_002338_020 0.1098502091 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]

Gene co-expression network

sample Hb_002876_240 Hb_002876_240 Hb_000094_330 Hb_000094_330 Hb_002876_240--Hb_000094_330 Hb_002820_110 Hb_002820_110 Hb_002876_240--Hb_002820_110 Hb_002820_050 Hb_002820_050 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_146673_010 Hb_146673_010 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030 Hb_006570_140 Hb_006570_140 Hb_000094_330--Hb_006570_140 Hb_000094_330--Hb_002820_050 Hb_001922_170 Hb_001922_170 Hb_000094_330--Hb_001922_170 Hb_000094_330--Hb_146673_010 Hb_000094_330--Hb_002820_110 Hb_000510_330 Hb_000510_330 Hb_002820_110--Hb_000510_330 Hb_017002_020 Hb_017002_020 Hb_002820_110--Hb_017002_020 Hb_000000_360 Hb_000000_360 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_004453_130--Hb_005730_120 Hb_000049_140 Hb_000049_140 Hb_004453_130--Hb_000049_140 Hb_001599_040 Hb_001599_040 Hb_004453_130--Hb_001599_040 Hb_005271_220 Hb_005271_220 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28434 1.37096 3.72301 1.55415 1.93225 2.94568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48168 4.15641 1.27437 1.93754 1.56605

CAGE analysis