Hb_002820_110

Information

Type -
Description -
Location Contig2820: 81641-85432
Sequence    

Annotation

kegg
ID cit:102623413
description hypothetical protein
nr
ID XP_012078212.1
description PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12076 PE=4 SV=1
Gene Ontology
ID GO:0010207
description thioredoxin superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29546: 81671-85466 , PASA_asmbl_29547: 83164-83615
cDNA
(Sanger)
(ID:Location)		 003_B11.ab1: 81729-85222 , 012_B06.ab1: 81731-85452 , 046_I07.ab1: 81731-85452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_110 0.0 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
2 Hb_000510_330 0.0572723247 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_002876_240 0.0731731695 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
4 Hb_017002_020 0.0885254044 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
5 Hb_000000_360 0.0915782419 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
6 Hb_008686_080 0.0966491932 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
7 Hb_000094_330 0.09702844 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
8 Hb_000286_070 0.0974507837 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_001221_320 0.0998089839 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_000836_170 0.1017225164 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
11 Hb_000003_600 0.1029574274 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
12 Hb_002045_040 0.1039940587 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_005773_060 0.1045770331 - - defender against cell death, putative [Ricinus communis]
14 Hb_004785_190 0.1048029831 - - PHD finger family protein [Populus trichocarpa]
15 Hb_000926_180 0.1071163877 - - proline synthetase associated protein, putative [Ricinus communis]
16 Hb_001534_120 0.1073977941 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
17 Hb_002374_170 0.1076246065 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
18 Hb_003687_230 0.1077778578 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
19 Hb_002811_260 0.1078437294 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_002349_040 0.1081075868 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002820_110 Hb_002820_110 Hb_000510_330 Hb_000510_330 Hb_002820_110--Hb_000510_330 Hb_002876_240 Hb_002876_240 Hb_002820_110--Hb_002876_240 Hb_017002_020 Hb_017002_020 Hb_002820_110--Hb_017002_020 Hb_000000_360 Hb_000000_360 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_000094_330 Hb_000094_330 Hb_002820_110--Hb_000094_330 Hb_000286_070 Hb_000286_070 Hb_000510_330--Hb_000286_070 Hb_000510_330--Hb_000000_360 Hb_000107_190 Hb_000107_190 Hb_000510_330--Hb_000107_190 Hb_000510_330--Hb_017002_020 Hb_000510_330--Hb_002876_240 Hb_002876_240--Hb_000094_330 Hb_002820_050 Hb_002820_050 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_146673_010 Hb_146673_010 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030 Hb_000444_080 Hb_000444_080 Hb_017002_020--Hb_000444_080 Hb_002045_040 Hb_002045_040 Hb_017002_020--Hb_002045_040 Hb_001534_050 Hb_001534_050 Hb_017002_020--Hb_001534_050 Hb_017002_020--Hb_002876_240 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_000694_040 Hb_000694_040 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_001328_040 Hb_001328_040 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_003544_020 Hb_003544_020 Hb_008686_080--Hb_003544_020 Hb_000805_120 Hb_000805_120 Hb_008686_080--Hb_000805_120 Hb_001221_320 Hb_001221_320 Hb_008686_080--Hb_001221_320 Hb_006570_140 Hb_006570_140 Hb_000094_330--Hb_006570_140 Hb_000094_330--Hb_002820_050 Hb_001922_170 Hb_001922_170 Hb_000094_330--Hb_001922_170 Hb_000094_330--Hb_146673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7199 9.74842 26.1157 8.68791 15.2662 18.8805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5649 25.3272 8.26962 10.4334 6.02709

CAGE analysis