Hb_001579_230

Information

Type -
Description -
Location Contig1579: 156471-167032
Sequence    

Annotation

kegg
ID cit:102617215
description uncharacterized LOC102617215
nr
ID XP_012085865.1
description PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K478
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17757 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13834: 157359-158578 , PASA_asmbl_13835: 157419-158622 , PASA_asmbl_13836: 158628-166071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_230 0.0 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
2 Hb_002918_030 0.0836152139 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
3 Hb_000000_360 0.0889366499 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
4 Hb_004122_040 0.0973213608 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
5 Hb_002110_230 0.0985628794 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
6 Hb_000836_170 0.0987347287 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
7 Hb_004195_130 0.0994209555 - - PREDICTED: thioredoxin domain-containing protein PLP3B [Sesamum indicum]
8 Hb_006120_070 0.1014332231 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
9 Hb_001186_090 0.1035891408 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
10 Hb_004897_020 0.1036340551 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
11 Hb_027043_020 0.104199382 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010315_060 0.1059144546 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_002477_300 0.1062406116 - - transcription factor, putative [Ricinus communis]
14 Hb_001221_320 0.1063899629 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
15 Hb_022132_050 0.1073669979 - - GTP binding protein, putative [Ricinus communis]
16 Hb_002687_130 0.1077985184 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
17 Hb_004449_170 0.1081945746 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
18 Hb_000731_160 0.1082398591 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
19 Hb_000392_230 0.108438044 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001268_240 0.1092802436 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_230 Hb_001579_230 Hb_002918_030 Hb_002918_030 Hb_001579_230--Hb_002918_030 Hb_000000_360 Hb_000000_360 Hb_001579_230--Hb_000000_360 Hb_004122_040 Hb_004122_040 Hb_001579_230--Hb_004122_040 Hb_002110_230 Hb_002110_230 Hb_001579_230--Hb_002110_230 Hb_000836_170 Hb_000836_170 Hb_001579_230--Hb_000836_170 Hb_004195_130 Hb_004195_130 Hb_001579_230--Hb_004195_130 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_000694_040 Hb_000694_040 Hb_000000_360--Hb_000694_040 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_000331_060 Hb_000331_060 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_058972_010 Hb_058972_010 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_000107_190 Hb_000107_190 Hb_004122_040--Hb_000107_190 Hb_004122_040--Hb_010315_060 Hb_001433_070 Hb_001433_070 Hb_002110_230--Hb_001433_070 Hb_005618_050 Hb_005618_050 Hb_002110_230--Hb_005618_050 Hb_000351_120 Hb_000351_120 Hb_002110_230--Hb_000351_120 Hb_002110_230--Hb_002918_030 Hb_063716_100 Hb_063716_100 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100 Hb_002338_020 Hb_002338_020 Hb_000836_170--Hb_002338_020 Hb_000836_170--Hb_005588_030 Hb_000576_050 Hb_000576_050 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000649_070 Hb_000649_070 Hb_000836_170--Hb_000649_070 Hb_000836_170--Hb_000260_100 Hb_004195_130--Hb_004122_040 Hb_004195_130--Hb_000331_060 Hb_000107_030 Hb_000107_030 Hb_004195_130--Hb_000107_030 Hb_004195_130--Hb_058972_010 Hb_004195_130--Hb_000836_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78232 0.363973 2.06496 1.14488 1.70145 1.7914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48575 2.00382 0.583208 1.24695 0.79934

CAGE analysis