Hb_004195_130

Information

Type -
Description -
Location Contig4195: 134682-142489
Sequence    

Annotation

kegg
ID vvi:100264353
description thioredoxin domain-containing protein PLP3A
nr
ID XP_011083186.1
description PREDICTED: thioredoxin domain-containing protein PLP3B [Sesamum indicum]
swissprot
ID Q8LCV1
description Thioredoxin domain-containing protein PLP3B OS=Arabidopsis thaliana GN=PLP3B PE=2 SV=1
trembl
ID A5C5Z5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031964 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41423: 131151-134079 , PASA_asmbl_41424: 134727-142381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_130 0.0 - - PREDICTED: thioredoxin domain-containing protein PLP3B [Sesamum indicum]
2 Hb_004122_040 0.0865831655 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_001579_230 0.0994209555 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
4 Hb_000331_060 0.1068795033 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
5 Hb_000107_030 0.1100120296 - - conserved hypothetical protein [Ricinus communis]
6 Hb_058972_010 0.1111687914 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
7 Hb_000836_170 0.1137368617 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
8 Hb_002918_030 0.1142563765 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
9 Hb_001186_090 0.1151347719 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
10 Hb_000576_050 0.1174383089 - - Kinase superfamily protein [Theobroma cacao]
11 Hb_001418_040 0.1176004481 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
12 Hb_003579_050 0.1187737843 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
13 Hb_002110_230 0.1190426575 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_002119_080 0.1221633062 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
15 Hb_032202_120 0.1231940492 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
16 Hb_000392_230 0.1232557978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002876_350 0.1233701182 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
18 Hb_000000_360 0.1234401409 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
19 Hb_010315_060 0.1250697435 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
20 Hb_000002_120 0.1266764263 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]

Gene co-expression network

sample Hb_004195_130 Hb_004195_130 Hb_004122_040 Hb_004122_040 Hb_004195_130--Hb_004122_040 Hb_001579_230 Hb_001579_230 Hb_004195_130--Hb_001579_230 Hb_000331_060 Hb_000331_060 Hb_004195_130--Hb_000331_060 Hb_000107_030 Hb_000107_030 Hb_004195_130--Hb_000107_030 Hb_058972_010 Hb_058972_010 Hb_004195_130--Hb_058972_010 Hb_000836_170 Hb_000836_170 Hb_004195_130--Hb_000836_170 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_000107_190 Hb_000107_190 Hb_004122_040--Hb_000107_190 Hb_010315_060 Hb_010315_060 Hb_004122_040--Hb_010315_060 Hb_002918_030 Hb_002918_030 Hb_001579_230--Hb_002918_030 Hb_000000_360 Hb_000000_360 Hb_001579_230--Hb_000000_360 Hb_001579_230--Hb_004122_040 Hb_002110_230 Hb_002110_230 Hb_001579_230--Hb_002110_230 Hb_001579_230--Hb_000836_170 Hb_073973_130 Hb_073973_130 Hb_000331_060--Hb_073973_130 Hb_000331_060--Hb_002119_080 Hb_000331_060--Hb_000107_190 Hb_000331_060--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000331_060--Hb_005337_090 Hb_005588_030 Hb_005588_030 Hb_000107_030--Hb_005588_030 Hb_003579_050 Hb_003579_050 Hb_000107_030--Hb_003579_050 Hb_005144_090 Hb_005144_090 Hb_000107_030--Hb_005144_090 Hb_000107_030--Hb_000836_170 Hb_001186_090 Hb_001186_090 Hb_000107_030--Hb_001186_090 Hb_000107_030--Hb_073973_130 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_058972_010--Hb_073973_130 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_002338_020 Hb_002338_020 Hb_000836_170--Hb_002338_020 Hb_000836_170--Hb_005588_030 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000649_070 Hb_000649_070 Hb_000836_170--Hb_000649_070 Hb_000260_100 Hb_000260_100 Hb_000836_170--Hb_000260_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60549 1.18795 4.98409 2.1102 4.1485 2.7515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03216 3.46952 0.790213 2.86766 1.51718

CAGE analysis