Hb_000331_060

Information

Type -
Description -
Location Contig331: 64656-68380
Sequence    

Annotation

kegg
ID csv:101226519
description 60S ribosomal protein L17-2-like
nr
ID XP_012079851.1
description PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
swissprot
ID P51413
description 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2
trembl
ID A0A067K7C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11304 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l17-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34752: 63885-64047 , PASA_asmbl_34754: 64744-68407
cDNA
(Sanger)
(ID:Location)		 048_I19.ab1: 64746-68290 , 049_F17.ab1: 64746-68186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_060 0.0 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
2 Hb_004122_040 0.0625235822 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_073973_130 0.0687701907 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
4 Hb_002119_080 0.0706831197 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
5 Hb_000107_190 0.0741464691 - - 50S ribosomal protein L20 [Hevea brasiliensis]
6 Hb_058972_010 0.0896388524 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
7 Hb_005337_090 0.0939672407 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
8 Hb_005588_030 0.094336844 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
9 Hb_002320_040 0.094395978 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
10 Hb_007576_080 0.0948230962 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
11 Hb_001089_110 0.0959513254 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003185_010 0.0965701988 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
13 Hb_003935_020 0.0968881076 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001433_070 0.0970987778 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
15 Hb_000163_220 0.0978807221 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
16 Hb_005779_010 0.0982617816 - - catalytic, putative [Ricinus communis]
17 Hb_032920_060 0.0985609475 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
18 Hb_000260_680 0.0996202413 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
19 Hb_000120_430 0.0997771961 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_033834_030 0.0999155452 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_060 Hb_000331_060 Hb_004122_040 Hb_004122_040 Hb_000331_060--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_000331_060--Hb_073973_130 Hb_002119_080 Hb_002119_080 Hb_000331_060--Hb_002119_080 Hb_000107_190 Hb_000107_190 Hb_000331_060--Hb_000107_190 Hb_058972_010 Hb_058972_010 Hb_000331_060--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000331_060--Hb_005337_090 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_004122_040--Hb_000107_190 Hb_010315_060 Hb_010315_060 Hb_004122_040--Hb_010315_060 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_002119_080--Hb_073973_130 Hb_001186_090 Hb_001186_090 Hb_002119_080--Hb_001186_090 Hb_002119_080--Hb_000107_190 Hb_002119_080--Hb_022132_050 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_000107_190--Hb_058972_010 Hb_000107_190--Hb_005337_090 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_058972_010--Hb_073973_130 Hb_058972_010--Hb_000610_010 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8931 24.3037 46.0514 27.2359 43.0467 34.5894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8064 44.2078 16.6959 35.5848 11.7755

CAGE analysis