Hb_000510_330

Information

Type -
Description -
Location Contig510: 311622-315985
Sequence    

Annotation

kegg
ID rcu:RCOM_0991580
description trytophan synthase alpha subunit, putative (EC:4.2.1.20)
nr
ID XP_012092126.1
description PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
swissprot
ID Q42529
description Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1
trembl
ID A0A067JC03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21847 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46317: 311700-315914
cDNA
(Sanger)
(ID:Location)		 016_M05.ab1: 311748-313580 , 029_C08.ab1: 311777-312833 , 033_N02.ab1: 311744-313592 , 049_G02.ab1: 311805-312916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_330 0.0 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
2 Hb_002820_110 0.0572723247 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
3 Hb_000286_070 0.0996840314 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_000000_360 0.1014360457 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
5 Hb_000107_190 0.1034198829 - - 50S ribosomal protein L20 [Hevea brasiliensis]
6 Hb_017002_020 0.1058431426 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
7 Hb_002876_240 0.1061238604 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_073973_130 0.1127699236 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
9 Hb_000836_170 0.1170170561 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_000003_600 0.1184947255 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
11 Hb_000009_530 0.1196172388 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
12 Hb_005773_060 0.1203220349 - - defender against cell death, putative [Ricinus communis]
13 Hb_002296_050 0.1212817867 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
14 Hb_004122_040 0.1238509921 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
15 Hb_000610_010 0.1248779902 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
16 Hb_021576_040 0.1250437883 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002119_080 0.1261644665 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
18 Hb_002234_140 0.1267213125 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
19 Hb_000694_040 0.127674189 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_002374_170 0.1277831256 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000510_330 Hb_000510_330 Hb_002820_110 Hb_002820_110 Hb_000510_330--Hb_002820_110 Hb_000286_070 Hb_000286_070 Hb_000510_330--Hb_000286_070 Hb_000000_360 Hb_000000_360 Hb_000510_330--Hb_000000_360 Hb_000107_190 Hb_000107_190 Hb_000510_330--Hb_000107_190 Hb_017002_020 Hb_017002_020 Hb_000510_330--Hb_017002_020 Hb_002876_240 Hb_002876_240 Hb_000510_330--Hb_002876_240 Hb_002820_110--Hb_002876_240 Hb_002820_110--Hb_017002_020 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_000094_330 Hb_000094_330 Hb_002820_110--Hb_000094_330 Hb_001329_290 Hb_001329_290 Hb_000286_070--Hb_001329_290 Hb_004787_060 Hb_004787_060 Hb_000286_070--Hb_004787_060 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_003292_040 Hb_003292_040 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_000694_040 Hb_000694_040 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_073973_130 Hb_073973_130 Hb_000107_190--Hb_073973_130 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000610_010 Hb_000610_010 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000107_190--Hb_005337_090 Hb_000444_080 Hb_000444_080 Hb_017002_020--Hb_000444_080 Hb_002045_040 Hb_002045_040 Hb_017002_020--Hb_002045_040 Hb_001534_050 Hb_001534_050 Hb_017002_020--Hb_001534_050 Hb_017002_020--Hb_002876_240 Hb_002876_240--Hb_000094_330 Hb_002820_050 Hb_002820_050 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_146673_010 Hb_146673_010 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1553 3.70792 9.00347 2.44556 4.52043 5.55401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28208 7.68604 2.09729 4.28324 1.31669

CAGE analysis