Hb_000286_070

Information

Type -
Description -
Location Contig286: 45508-48155
Sequence    

Annotation

kegg
ID vvi:100257471
description 60S ribosomal protein L13-1
nr
ID XP_012090947.1
description PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
swissprot
ID P41129
description 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
trembl
ID A0A067JD82
description 60S ribosomal protein L13 OS=Jatropha curcas GN=JCGZ_00588 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l13-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29873: 45665-48129 , PASA_asmbl_29874: 45665-62465 , PASA_asmbl_29875: 45875-47160 , PASA_asmbl_29876: 46438-46766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_070 0.0 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
2 Hb_001329_290 0.0585582128 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
3 Hb_004787_060 0.0648759645 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_000009_530 0.06698475 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_001534_120 0.0761162798 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
6 Hb_003292_040 0.0774320033 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
7 Hb_003935_020 0.0779507177 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001504_020 0.0792316489 - - 40S ribosomal protein S12A [Hevea brasiliensis]
9 Hb_002234_140 0.0799203933 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
10 Hb_004449_170 0.0802564039 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
11 Hb_021419_020 0.0812858906 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
12 Hb_000610_010 0.0835073966 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_000959_210 0.0874840447 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
14 Hb_001564_130 0.0899851885 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_005588_030 0.090054027 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
16 Hb_021576_040 0.0915824538 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010921_010 0.0932473062 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
18 Hb_027472_040 0.0937696556 - - SKP1 [Hevea brasiliensis]
19 Hb_007423_040 0.0957564122 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
20 Hb_000107_190 0.0963037651 - - 50S ribosomal protein L20 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000286_070 Hb_000286_070 Hb_001329_290 Hb_001329_290 Hb_000286_070--Hb_001329_290 Hb_004787_060 Hb_004787_060 Hb_000286_070--Hb_004787_060 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_003292_040 Hb_003292_040 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_004449_170 Hb_004449_170 Hb_001329_290--Hb_004449_170 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_003292_040--Hb_000610_010 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_002652_030 Hb_002652_030 Hb_003935_020--Hb_002652_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
145.357 88.3948 172.442 73.4752 150.968 110.215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
137.987 254.687 65.0836 97.4181 49.1303

CAGE analysis