Hb_000805_120

Information

Type -
Description -
Location Contig805: 86367-89034
Sequence    

Annotation

kegg
ID rcu:RCOM_0300270
description ubiquitin fusion degradaton protein, putative
nr
ID XP_002533746.1
description ubiquitin fusion degradaton protein, putative [Ricinus communis]
swissprot
ID Q9ES53
description Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1
trembl
ID B9T677
description Ubiquitin fusion degradaton protein, putative OS=Ricinus communis GN=RCOM_0300270 PE=4 SV=1
Gene Ontology
ID GO:0006511
description ubiquitin fusion degradation protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58968: 86634-88216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_120 0.0 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
2 Hb_145880_030 0.0796109454 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
3 Hb_002045_040 0.0824422542 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_001662_070 0.0905811508 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
5 Hb_008686_080 0.0911715611 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
6 Hb_023226_040 0.0940742321 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
7 Hb_000251_070 0.0941325617 - - hypothetical protein L484_010641 [Morus notabilis]
8 Hb_003078_040 0.0946014581 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
9 Hb_003749_010 0.0956340045 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001404_100 0.0988872981 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
11 Hb_005000_210 0.0989530161 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
12 Hb_000023_230 0.0993842212 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
13 Hb_010407_040 0.0996679844 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
14 Hb_028995_040 0.0999735142 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
15 Hb_025645_010 0.1020907256 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
16 Hb_003607_150 0.1032320059 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
17 Hb_000771_120 0.103300335 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
18 Hb_007778_030 0.103979717 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_000367_200 0.1046981788 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
20 Hb_000003_600 0.1060399753 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_120 Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_000805_120--Hb_145880_030 Hb_002045_040 Hb_002045_040 Hb_000805_120--Hb_002045_040 Hb_001662_070 Hb_001662_070 Hb_000805_120--Hb_001662_070 Hb_008686_080 Hb_008686_080 Hb_000805_120--Hb_008686_080 Hb_023226_040 Hb_023226_040 Hb_000805_120--Hb_023226_040 Hb_000251_070 Hb_000251_070 Hb_000805_120--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_145880_030--Hb_023226_040 Hb_011381_060 Hb_011381_060 Hb_002045_040--Hb_011381_060 Hb_002045_040--Hb_145880_030 Hb_002045_040--Hb_000251_070 Hb_002045_040--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_002045_040--Hb_002374_170 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_001328_040 Hb_001328_040 Hb_008686_080--Hb_001328_040 Hb_008686_080--Hb_001662_070 Hb_003544_020 Hb_003544_020 Hb_008686_080--Hb_003544_020 Hb_001221_320 Hb_001221_320 Hb_008686_080--Hb_001221_320 Hb_002007_060 Hb_002007_060 Hb_023226_040--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_000251_070--Hb_001662_070 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.3401 17.711 30.9881 17.7972 24.7932 23.149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.9052 43.625 24.8987 15.63 9.74459

CAGE analysis