Hb_004934_110

Information

Type transcription factor
Description TF Family: HMG
Location Contig4934: 77379-80449
Sequence    

Annotation

kegg
ID eus:EUTSA_v10009970mg
description hypothetical protein
nr
ID KJB14227.1
description hypothetical protein B456_002G115100 [Gossypium raimondii]
swissprot
ID O49596
description High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1
trembl
ID A0A0D2M9M8
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G115100 PE=4 SV=1
Gene Ontology
ID GO:0000785
description high mobility group beta isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45387: 77417-79213 , PASA_asmbl_45388: 77656-78214 , PASA_asmbl_45389: 77437-80193
cDNA
(Sanger)
(ID:Location)		 006_D01.ab1: 77417-78990 , 007_N08.ab1: 77444-79068 , 009_D12.ab1: 77444-79070 , 011_B11.ab1: 77464-79085 , 013_F18.ab1: 77463-79069 , 026_L08.ab1: 77461-79084 , 027_K14.ab1: 77464-79068 , 029_D18.ab1: 77464-79063 , 037_G06.ab1: 77444-79091 , 040_G15.ab1: 77518-79082 , 040_M12.ab1: 77444-79087 , 042_O05.ab1: 77461-79061 , 043_E16.ab1: 77414-79065 , 046_B18.ab1: 78651-79087 , 047_I13.ab1: 77460-78864 , 052_G14.ab1: 77444-79046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_110 0.0 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
2 Hb_004931_090 0.0730917517 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
3 Hb_000251_070 0.0736271992 - - hypothetical protein L484_010641 [Morus notabilis]
4 Hb_004657_050 0.0762656064 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
5 Hb_000331_080 0.078392337 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
6 Hb_003607_050 0.0796229195 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
7 Hb_000840_030 0.0806704935 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
8 Hb_002686_020 0.0815895937 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_003683_120 0.0853454248 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004204_120 0.0866459705 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
11 Hb_000887_020 0.0867413858 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
12 Hb_000510_110 0.0904207569 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
13 Hb_000201_120 0.0913966862 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
14 Hb_181288_010 0.0921365509 - - rac-GTP binding protein, putative [Ricinus communis]
15 Hb_165132_010 0.0925925444 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
16 Hb_012725_050 0.0931824086 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
17 Hb_011781_030 0.0947401813 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
18 Hb_024682_010 0.0960672513 - - sterol isomerase, putative [Ricinus communis]
19 Hb_026549_040 0.0961825478 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
20 Hb_001235_190 0.096514403 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004934_110 Hb_004934_110 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_000251_070 Hb_000251_070 Hb_004934_110--Hb_000251_070 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_003607_050 Hb_003607_050 Hb_004934_110--Hb_003607_050 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_002007_060 Hb_002007_060 Hb_004657_050--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_004657_050--Hb_000866_270 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_003125_190 Hb_003125_190 Hb_003607_050--Hb_003125_190 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_000840_030--Hb_153112_020 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1468.19 429.018 655.878 468.807 768.484 850.793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1751.07 1958.09 931.777 441.189 659.811

CAGE analysis