Hb_010106_010

Information

Type -
Description -
Location Contig10106: 6622-10795
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20400g
description POPTRDRAFT_227262; cucumisin family protein
nr
ID XP_011036040.1
description PREDICTED: cucumisin-like [Populus euphratica]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9HT42
description Cucumisin family protein OS=Populus trichocarpa GN=POPTR_0010s20400g PE=4 SV=2
Gene Ontology
ID GO:0004252
description subtilisin-like serine endopeptidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00604: 9764-10502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010106_010 0.0 - - PREDICTED: cucumisin-like [Populus euphratica]
2 Hb_003607_050 0.0803891249 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
3 Hb_003125_190 0.0879342565 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
4 Hb_000633_020 0.0897566582 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
5 Hb_000529_030 0.096558236 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010222_020 0.101310669 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
7 Hb_002768_030 0.1014991921 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
8 Hb_011512_070 0.1043623242 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_000236_390 0.1063852063 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
10 Hb_001476_080 0.1064260125 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
11 Hb_146673_010 0.1067639941 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
12 Hb_004934_110 0.1070414284 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
13 Hb_000094_330 0.1100614928 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
14 Hb_003749_010 0.1101559314 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001504_110 0.110982469 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
16 Hb_004096_090 0.1121618627 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
17 Hb_139518_030 0.1122184714 - - protein kinase atn1, putative [Ricinus communis]
18 Hb_000321_160 0.1125913299 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_018133_020 0.1132420448 - - transporter, putative [Ricinus communis]
20 Hb_077354_010 0.1134939398 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]

Gene co-expression network

sample Hb_010106_010 Hb_010106_010 Hb_003607_050 Hb_003607_050 Hb_010106_010--Hb_003607_050 Hb_003125_190 Hb_003125_190 Hb_010106_010--Hb_003125_190 Hb_000633_020 Hb_000633_020 Hb_010106_010--Hb_000633_020 Hb_000529_030 Hb_000529_030 Hb_010106_010--Hb_000529_030 Hb_010222_020 Hb_010222_020 Hb_010106_010--Hb_010222_020 Hb_002768_030 Hb_002768_030 Hb_010106_010--Hb_002768_030 Hb_003607_050--Hb_003125_190 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_003125_190--Hb_000887_020 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_004195_270 Hb_004195_270 Hb_010222_020--Hb_004195_270 Hb_000815_320 Hb_000815_320 Hb_010222_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_010222_020--Hb_009694_010 Hb_010222_020--Hb_004096_090 Hb_010222_020--Hb_001195_480 Hb_000053_110 Hb_000053_110 Hb_010222_020--Hb_000053_110 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06739 0.547923 1.04076 0.435476 0.44009 0.76876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47686 1.78642 0.592347 0.34494 0.696857

CAGE analysis