Hb_003749_010

Information

Type -
Description -
Location Contig3749: 11494-15165
Sequence    

Annotation

kegg
ID rcu:RCOM_0204920
description hypothetical protein
nr
ID XP_002527971.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3UQA7
description Selenoprotein H OS=Mus musculus GN=Selh PE=3 SV=2
trembl
ID B9SPQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0204920 PE=4 SV=1
Gene Ontology
ID GO:0005623
description selenoprotein h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38242: 11546-15170 , PASA_asmbl_38243: 12212-12319 , PASA_asmbl_38244: 12359-12489 , PASA_asmbl_38245: 13628-14090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003749_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003607_050 0.0901173281 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
3 Hb_001983_020 0.090550461 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
4 Hb_003185_080 0.0914886825 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
5 Hb_001157_020 0.0916645209 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
6 Hb_002141_030 0.0930487752 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004195_270 0.0944179924 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
8 Hb_000251_070 0.0946941654 - - hypothetical protein L484_010641 [Morus notabilis]
9 Hb_000805_120 0.0956340045 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
10 Hb_004934_110 0.097993517 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
11 Hb_000059_330 0.0981168304 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_000787_050 0.0985097306 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
13 Hb_000529_030 0.0985767786 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005288_190 0.0985935153 - - PREDICTED: exportin-4 [Jatropha curcas]
15 Hb_000109_090 0.0989635736 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
16 Hb_002045_040 0.1017002185 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_002349_040 0.1025604943 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
18 Hb_000887_020 0.1033007611 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
19 Hb_139518_030 0.1041660434 - - protein kinase atn1, putative [Ricinus communis]
20 Hb_001195_280 0.1043140833 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_003749_010 Hb_003749_010 Hb_003607_050 Hb_003607_050 Hb_003749_010--Hb_003607_050 Hb_001983_020 Hb_001983_020 Hb_003749_010--Hb_001983_020 Hb_003185_080 Hb_003185_080 Hb_003749_010--Hb_003185_080 Hb_001157_020 Hb_001157_020 Hb_003749_010--Hb_001157_020 Hb_002141_030 Hb_002141_030 Hb_003749_010--Hb_002141_030 Hb_004195_270 Hb_004195_270 Hb_003749_010--Hb_004195_270 Hb_003125_190 Hb_003125_190 Hb_003607_050--Hb_003125_190 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_000069_600 Hb_000069_600 Hb_001983_020--Hb_000069_600 Hb_000679_010 Hb_000679_010 Hb_001983_020--Hb_000679_010 Hb_000212_330 Hb_000212_330 Hb_001983_020--Hb_000212_330 Hb_032202_190 Hb_032202_190 Hb_001983_020--Hb_032202_190 Hb_172426_040 Hb_172426_040 Hb_001983_020--Hb_172426_040 Hb_000958_110 Hb_000958_110 Hb_001983_020--Hb_000958_110 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040 Hb_028227_020 Hb_028227_020 Hb_001157_020--Hb_028227_020 Hb_012725_050 Hb_012725_050 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_002490_020 Hb_002490_020 Hb_002141_030--Hb_002490_020 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.66 68.3518 91.8179 59.6896 101.548 80.6683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
206.124 148.976 74.7839 48.125 76.8209

CAGE analysis