Hb_001983_020

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1983: 2228-10422
Sequence    

Annotation

kegg
ID rcu:RCOM_1627490
description hypothetical protein
nr
ID XP_012084725.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001983_020 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
2 Hb_000069_600 0.078213264 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
3 Hb_000679_010 0.0842100578 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
4 Hb_000212_330 0.0862702869 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_032202_190 0.0867221053 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
6 Hb_172426_040 0.0873760843 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
7 Hb_000958_110 0.0893344009 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
8 Hb_002490_020 0.0897440052 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
9 Hb_003749_010 0.090550461 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002141_030 0.0925407082 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006059_050 0.0932433349 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_000787_050 0.0943228224 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
13 Hb_004195_270 0.0955456573 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_000521_080 0.0955629798 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
15 Hb_089995_010 0.0962728946 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_003050_220 0.0964940921 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
17 Hb_002016_170 0.0966471516 - - DNA binding protein, putative [Ricinus communis]
18 Hb_003057_100 0.0969990394 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
19 Hb_001902_140 0.0970753516 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
20 Hb_000668_040 0.0987748773 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001983_020 Hb_001983_020 Hb_000069_600 Hb_000069_600 Hb_001983_020--Hb_000069_600 Hb_000679_010 Hb_000679_010 Hb_001983_020--Hb_000679_010 Hb_000212_330 Hb_000212_330 Hb_001983_020--Hb_000212_330 Hb_032202_190 Hb_032202_190 Hb_001983_020--Hb_032202_190 Hb_172426_040 Hb_172426_040 Hb_001983_020--Hb_172426_040 Hb_000958_110 Hb_000958_110 Hb_001983_020--Hb_000958_110 Hb_022181_020 Hb_022181_020 Hb_000069_600--Hb_022181_020 Hb_035273_030 Hb_035273_030 Hb_000069_600--Hb_035273_030 Hb_000069_600--Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000069_600--Hb_003050_220 Hb_089995_010 Hb_089995_010 Hb_000069_600--Hb_089995_010 Hb_000679_010--Hb_032202_190 Hb_003092_040 Hb_003092_040 Hb_000679_010--Hb_003092_040 Hb_025645_010 Hb_025645_010 Hb_000679_010--Hb_025645_010 Hb_001902_140 Hb_001902_140 Hb_000679_010--Hb_001902_140 Hb_008511_120 Hb_008511_120 Hb_000679_010--Hb_008511_120 Hb_006615_020 Hb_006615_020 Hb_000679_010--Hb_006615_020 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000094_300 Hb_000094_300 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_000958_110--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_000958_110--Hb_000015_040 Hb_000002_340 Hb_000002_340 Hb_000958_110--Hb_000002_340 Hb_002232_410 Hb_002232_410 Hb_000958_110--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000958_110--Hb_003151_040 Hb_017224_030 Hb_017224_030 Hb_000958_110--Hb_017224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3671 6.87558 9.29368 7.63897 8.32122 9.68876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2572 13.6384 13.9123 7.52881 7.92525

CAGE analysis