Hb_035273_030

Information

Type rubber biosynthesis
Description Gene Name: Mevalonate kinase
Location Contig35273: 13733-17910
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006979mg
description hypothetical protein
nr
ID AIO11226.1
description mevalonate kinase [Hevea brasiliensis]
swissprot
ID P46086
description Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1
trembl
ID A0A088SGB4
description Mevalonate kinase OS=Hevea brasiliensis GN=MVK PE=3 SV=1
Gene Ontology
ID GO:0005829
description mevalonate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36622: 13837-17893
cDNA
(Sanger)
(ID:Location)		 030_K02.ab1: 13941-16849

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035273_030 0.0 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
2 Hb_005433_040 0.0819655173 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
3 Hb_022181_020 0.0821574167 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
4 Hb_000069_600 0.097258392 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
5 Hb_001983_020 0.0995668411 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_003732_020 0.1013859002 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
7 Hb_001100_060 0.1048422818 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
8 Hb_011316_100 0.1082299829 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
9 Hb_000445_420 0.1086095502 - - protein transporter, putative [Ricinus communis]
10 Hb_005663_060 0.1134873106 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
11 Hb_002253_070 0.1137237732 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
12 Hb_003206_070 0.1144286286 - - organic anion transporter, putative [Ricinus communis]
13 Hb_065525_020 0.1149827059 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
14 Hb_000840_030 0.1151787709 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
15 Hb_000496_060 0.1153933507 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
16 Hb_003032_040 0.1154925345 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
17 Hb_026527_030 0.1156866154 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_000648_110 0.1164672588 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
19 Hb_024185_020 0.1181246114 - - -
20 Hb_000096_090 0.1186506219 - - hypothetical protein JCGZ_12551 [Jatropha curcas]

Gene co-expression network

sample Hb_035273_030 Hb_035273_030 Hb_005433_040 Hb_005433_040 Hb_035273_030--Hb_005433_040 Hb_022181_020 Hb_022181_020 Hb_035273_030--Hb_022181_020 Hb_000069_600 Hb_000069_600 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_001105_070 Hb_001105_070 Hb_005433_040--Hb_001105_070 Hb_009773_020 Hb_009773_020 Hb_005433_040--Hb_009773_020 Hb_001135_080 Hb_001135_080 Hb_005433_040--Hb_001135_080 Hb_065525_020 Hb_065525_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_002374_100 Hb_002374_100 Hb_022181_020--Hb_002374_100 Hb_022181_020--Hb_000069_600 Hb_000445_420 Hb_000445_420 Hb_022181_020--Hb_000445_420 Hb_000111_360 Hb_000111_360 Hb_022181_020--Hb_000111_360 Hb_002769_050 Hb_002769_050 Hb_022181_020--Hb_002769_050 Hb_000069_600--Hb_001983_020 Hb_000958_110 Hb_000958_110 Hb_000069_600--Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000069_600--Hb_003050_220 Hb_089995_010 Hb_089995_010 Hb_000069_600--Hb_089995_010 Hb_000679_010 Hb_000679_010 Hb_001983_020--Hb_000679_010 Hb_000212_330 Hb_000212_330 Hb_001983_020--Hb_000212_330 Hb_032202_190 Hb_032202_190 Hb_001983_020--Hb_032202_190 Hb_172426_040 Hb_172426_040 Hb_001983_020--Hb_172426_040 Hb_001983_020--Hb_000958_110 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_001360_040 Hb_001360_040 Hb_003732_020--Hb_001360_040 Hb_002685_140 Hb_002685_140 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_000671_050 Hb_000671_050 Hb_001100_060--Hb_000671_050 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_002046_190 Hb_002046_190 Hb_001100_060--Hb_002046_190 Hb_000173_290 Hb_000173_290 Hb_001100_060--Hb_000173_290 Hb_001959_070 Hb_001959_070 Hb_001100_060--Hb_001959_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.072 9.45546 19.3207 22.4812 19.2414 33.2205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.8316 34.9802 46.7188 22.578 18.5413

CAGE analysis