Hb_022181_020

Information

Type -
Description -
Location Contig22181: 15155-17457
Sequence    

Annotation

kegg
ID rcu:RCOM_1012860
description D-tyrosyl-tRNA(Tyr) deacylase, putative
nr
ID XP_012091707.1
description PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
swissprot
ID Q54EY1
description D-tyrosyl-tRNA(Tyr) deacylase OS=Dictyostelium discoideum GN=dtd PE=3 SV=1
trembl
ID A0A067JB96
description D-tyrosyl-tRNA(Tyr) deacylase OS=Jatropha curcas GN=JCGZ_21513 PE=3 SV=1
Gene Ontology
ID GO:0005737
description d-tyrosyl-trna deacylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22987: 15339-17549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022181_020 0.0 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
2 Hb_035273_030 0.0821574167 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
3 Hb_002374_100 0.0869216813 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
4 Hb_000069_600 0.0916183727 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
5 Hb_000445_420 0.0976888827 - - protein transporter, putative [Ricinus communis]
6 Hb_000111_360 0.1038718536 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002769_050 0.1041303474 - - PREDICTED: endophilin-A1 [Jatropha curcas]
8 Hb_000260_810 0.104800407 - - -
9 Hb_003032_040 0.1052200962 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
10 Hb_002253_070 0.1066901199 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
11 Hb_001818_090 0.1077888067 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006915_050 0.1095716906 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
13 Hb_005183_120 0.1117992845 - - protein translocase, putative [Ricinus communis]
14 Hb_003732_020 0.1123750196 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
15 Hb_000976_430 0.1132142006 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
16 Hb_000010_460 0.1136119249 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
17 Hb_024185_020 0.1141099196 - - -
18 Hb_001983_020 0.1150067334 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_000696_310 0.1177280339 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
20 Hb_000010_470 0.1178602345 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_022181_020 Hb_022181_020 Hb_035273_030 Hb_035273_030 Hb_022181_020--Hb_035273_030 Hb_002374_100 Hb_002374_100 Hb_022181_020--Hb_002374_100 Hb_000069_600 Hb_000069_600 Hb_022181_020--Hb_000069_600 Hb_000445_420 Hb_000445_420 Hb_022181_020--Hb_000445_420 Hb_000111_360 Hb_000111_360 Hb_022181_020--Hb_000111_360 Hb_002769_050 Hb_002769_050 Hb_022181_020--Hb_002769_050 Hb_005433_040 Hb_005433_040 Hb_035273_030--Hb_005433_040 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_000976_430 Hb_000976_430 Hb_002374_100--Hb_000976_430 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_000069_600--Hb_001983_020 Hb_000958_110 Hb_000958_110 Hb_000069_600--Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000069_600--Hb_003050_220 Hb_089995_010 Hb_089995_010 Hb_000069_600--Hb_089995_010 Hb_007441_120 Hb_007441_120 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000445_420--Hb_002016_110 Hb_004055_030 Hb_004055_030 Hb_000445_420--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_000754_040 Hb_000754_040 Hb_000111_360--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_000111_360--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_002006_090 Hb_002006_090 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_002769_050--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_002769_050--Hb_002687_110 Hb_001818_090 Hb_001818_090 Hb_002769_050--Hb_001818_090 Hb_003032_040 Hb_003032_040 Hb_002769_050--Hb_003032_040 Hb_000080_190 Hb_000080_190 Hb_002769_050--Hb_000080_190 Hb_000696_310 Hb_000696_310 Hb_002769_050--Hb_000696_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.687 4.7971 8.3473 5.63097 8.26953 13.0409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1893 12.7677 24.3476 12.1191 7.81069

CAGE analysis