Hb_006198_110

Information

Type -
Description -
Location Contig6198: 82136-83795
Sequence    

Annotation

kegg
ID rcu:RCOM_1721230
description hypothetical protein
nr
ID XP_012085133.1
description PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
swissprot
ID Q8LDV3
description Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=2 SV=2
trembl
ID A0A067JR90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17560 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein At4g13200, chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51377: 82559-82950 , PASA_asmbl_51378: 82069-83692
cDNA
(Sanger)
(ID:Location)		 010_K01.ab1: 82095-83490 , 035_A17.ab1: 82069-83474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_110 0.0 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
2 Hb_004751_020 0.065514958 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
3 Hb_000853_420 0.0823962778 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_001259_090 0.0868446486 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
5 Hb_004657_050 0.0869632768 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
6 Hb_003185_080 0.0878869355 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_000866_270 0.0884361644 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
8 Hb_007919_060 0.094221424 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
9 Hb_028995_040 0.0952544061 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
10 Hb_000109_090 0.096438239 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_023226_040 0.0978339144 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
12 Hb_002141_030 0.0978799575 - - conserved hypothetical protein [Ricinus communis]
13 Hb_164804_010 0.0981255338 - - JHL23J11.8 [Jatropha curcas]
14 Hb_022250_030 0.0984023271 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004491_010 0.0987282263 - - 60S ribosomal protein L51, putative [Ricinus communis]
16 Hb_001552_020 0.09875174 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
17 Hb_001195_330 0.0993881682 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000365_120 0.1009389367 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
19 Hb_002928_130 0.1028373451 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
20 Hb_001138_050 0.1042971299 - - hypothetical protein JCGZ_15696 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_110 Hb_006198_110 Hb_004751_020 Hb_004751_020 Hb_006198_110--Hb_004751_020 Hb_000853_420 Hb_000853_420 Hb_006198_110--Hb_000853_420 Hb_001259_090 Hb_001259_090 Hb_006198_110--Hb_001259_090 Hb_004657_050 Hb_004657_050 Hb_006198_110--Hb_004657_050 Hb_003185_080 Hb_003185_080 Hb_006198_110--Hb_003185_080 Hb_000866_270 Hb_000866_270 Hb_006198_110--Hb_000866_270 Hb_004751_020--Hb_000866_270 Hb_010661_030 Hb_010661_030 Hb_004751_020--Hb_010661_030 Hb_004751_020--Hb_004657_050 Hb_002232_440 Hb_002232_440 Hb_004751_020--Hb_002232_440 Hb_002928_130 Hb_002928_130 Hb_004751_020--Hb_002928_130 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_002603_120 Hb_002603_120 Hb_000853_420--Hb_002603_120 Hb_004491_010 Hb_004491_010 Hb_000853_420--Hb_004491_010 Hb_011671_430 Hb_011671_430 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_000661_250 Hb_000661_250 Hb_001259_090--Hb_000661_250 Hb_001259_090--Hb_000866_270 Hb_096563_010 Hb_096563_010 Hb_001259_090--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_003185_080--Hb_028995_040 Hb_000866_270--Hb_002007_060 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000866_270--Hb_000661_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.0327 38.1191 24.3411 13.9486 49.716 40.622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.7684 68.5306 38.7177 28.3767 27.5108

CAGE analysis