Hb_004751_020

Information

Type -
Description -
Location Contig4751: 44464-46806
Sequence    

Annotation

kegg
ID vvi:100245448
description uncharacterized LOC100245448
nr
ID XP_012089989.1
description PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID A0A067LL01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01529 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44488: 44501-47051
cDNA
(Sanger)
(ID:Location)		 031_C20.ab1: 44543-46061

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004751_020 0.0 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
2 Hb_006198_110 0.065514958 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
3 Hb_000866_270 0.0873495887 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_010661_030 0.0901040584 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
5 Hb_004657_050 0.0923690704 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
6 Hb_002232_440 0.0941780377 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
7 Hb_002928_130 0.095510809 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
8 Hb_000365_120 0.0955193636 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
9 Hb_005883_030 0.0965175646 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
10 Hb_002942_190 0.0971747984 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_002963_020 0.1003238054 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002141_030 0.1005292146 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001259_090 0.1036647682 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
14 Hb_006913_030 0.1043950622 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
15 Hb_004491_010 0.106880937 - - 60S ribosomal protein L51, putative [Ricinus communis]
16 Hb_001552_020 0.1068930445 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
17 Hb_000853_420 0.106914914 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_000107_620 0.1071303942 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
19 Hb_112798_030 0.1071714761 - - conserved hypothetical protein [Ricinus communis]
20 Hb_028995_040 0.1072790366 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004751_020 Hb_004751_020 Hb_006198_110 Hb_006198_110 Hb_004751_020--Hb_006198_110 Hb_000866_270 Hb_000866_270 Hb_004751_020--Hb_000866_270 Hb_010661_030 Hb_010661_030 Hb_004751_020--Hb_010661_030 Hb_004657_050 Hb_004657_050 Hb_004751_020--Hb_004657_050 Hb_002232_440 Hb_002232_440 Hb_004751_020--Hb_002232_440 Hb_002928_130 Hb_002928_130 Hb_004751_020--Hb_002928_130 Hb_000853_420 Hb_000853_420 Hb_006198_110--Hb_000853_420 Hb_001259_090 Hb_001259_090 Hb_006198_110--Hb_001259_090 Hb_006198_110--Hb_004657_050 Hb_003185_080 Hb_003185_080 Hb_006198_110--Hb_003185_080 Hb_006198_110--Hb_000866_270 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_004657_050--Hb_023226_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270 Hb_002232_440--Hb_002928_130 Hb_002232_440--Hb_007154_020 Hb_001540_010 Hb_001540_010 Hb_002232_440--Hb_001540_010 Hb_001292_020 Hb_001292_020 Hb_002232_440--Hb_001292_020 Hb_010921_010 Hb_010921_010 Hb_002232_440--Hb_010921_010 Hb_000698_030 Hb_000698_030 Hb_002232_440--Hb_000698_030 Hb_005993_040 Hb_005993_040 Hb_002928_130--Hb_005993_040 Hb_000015_080 Hb_000015_080 Hb_002928_130--Hb_000015_080 Hb_000392_440 Hb_000392_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
186.363 64.1854 61.4776 26.2518 108.95 75.1965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.792 156.537 100.461 67.9294 60.6173

CAGE analysis